186 related articles for article (PubMed ID: 25080362)
1. Analysis of interactions between the epigenome and structural mutability of the genome using Genboree Workbench tools.
Coarfa C; Pichot C; Jackson A; Tandon A; Amin V; Raghuraman S; Paithankar S; Lee AV; McGuire SE; Milosavljevic A
BMC Bioinformatics; 2014; 15 Suppl 7(Suppl 7):S2. PubMed ID: 25080362
[TBL] [Abstract][Full Text] [Related]
2. Genomic hypomethylation in the human germline associates with selective structural mutability in the human genome.
Li J; Harris RA; Cheung SW; Coarfa C; Jeong M; Goodell MA; White LD; Patel A; Kang SH; Shaw C; Chinault AC; Gambin T; Gambin A; Lupski JR; Milosavljevic A
PLoS Genet; 2012; 8(5):e1002692. PubMed ID: 22615578
[TBL] [Abstract][Full Text] [Related]
3. Polycomb repressive complex 2 epigenomic signature defines age-associated hypermethylation and gene expression changes.
Dozmorov MG
Epigenetics; 2015; 10(6):484-95. PubMed ID: 25880792
[TBL] [Abstract][Full Text] [Related]
4. Epigenomics in stress tolerance of plants under the climate change.
Kumar M; Rani K
Mol Biol Rep; 2023 Jul; 50(7):6201-6216. PubMed ID: 37294468
[TBL] [Abstract][Full Text] [Related]
5. Predicting the human epigenome from DNA motifs.
Whitaker JW; Chen Z; Wang W
Nat Methods; 2015 Mar; 12(3):265-72, 7 p following 272. PubMed ID: 25240437
[TBL] [Abstract][Full Text] [Related]
6. EpiCompare: an online tool to define and explore genomic regions with tissue or cell type-specific epigenomic features.
He Y; Wang T
Bioinformatics; 2017 Oct; 33(20):3268-3275. PubMed ID: 28605501
[TBL] [Abstract][Full Text] [Related]
7. Analyzing DNA Methylation Patterns During Tumor Evolution.
Pan H; Elemento O
Methods Mol Biol; 2018; 1711():27-53. PubMed ID: 29344884
[TBL] [Abstract][Full Text] [Related]
8. Systematic identification and annotation of human methylation marks based on bisulfite sequencing methylomes reveals distinct roles of cell type-specific hypomethylation in the regulation of cell identity genes.
Liu H; Liu X; Zhang S; Lv J; Li S; Shang S; Jia S; Wei Y; Wang F; Su J; Wu Q; Zhang Y
Nucleic Acids Res; 2016 Jan; 44(1):75-94. PubMed ID: 26635396
[TBL] [Abstract][Full Text] [Related]
9. DGW: an exploratory data analysis tool for clustering and visualisation of epigenomic marks.
Lukauskas S; Visintainer R; Sanguinetti G; Schweikert GB
BMC Bioinformatics; 2016 Dec; 17(Suppl 16):447. PubMed ID: 28105912
[TBL] [Abstract][Full Text] [Related]
10. Chromatin loop anchors are associated with genome instability in cancer and recombination hotspots in the germline.
Kaiser VB; Semple CA
Genome Biol; 2018 Jul; 19(1):101. PubMed ID: 30060743
[TBL] [Abstract][Full Text] [Related]
11. Spatiotemporal clustering of the epigenome reveals rules of dynamic gene regulation.
Yu P; Xiao S; Xin X; Song CX; Huang W; McDee D; Tanaka T; Wang T; He C; Zhong S
Genome Res; 2013 Feb; 23(2):352-64. PubMed ID: 23033340
[TBL] [Abstract][Full Text] [Related]
12. Comparative methylome analysis in solid tumors reveals aberrant methylation at chromosome 6p in nasopharyngeal carcinoma.
Dai W; Cheung AK; Ko JM; Cheng Y; Zheng H; Ngan RK; Ng WT; Lee AW; Yau CC; Lee VH; Lung ML
Cancer Med; 2015 Jul; 4(7):1079-90. PubMed ID: 25924914
[TBL] [Abstract][Full Text] [Related]
13. Integrative analysis of 111 reference human epigenomes.
; Kundaje A; Meuleman W; Ernst J; Bilenky M; Yen A; Heravi-Moussavi A; Kheradpour P; Zhang Z; Wang J; Ziller MJ; Amin V; Whitaker JW; Schultz MD; Ward LD; Sarkar A; Quon G; Sandstrom RS; Eaton ML; Wu YC; Pfenning AR; Wang X; Claussnitzer M; Liu Y; Coarfa C; Harris RA; Shoresh N; Epstein CB; Gjoneska E; Leung D; Xie W; Hawkins RD; Lister R; Hong C; Gascard P; Mungall AJ; Moore R; Chuah E; Tam A; Canfield TK; Hansen RS; Kaul R; Sabo PJ; Bansal MS; Carles A; Dixon JR; Farh KH; Feizi S; Karlic R; Kim AR; Kulkarni A; Li D; Lowdon R; Elliott G; Mercer TR; Neph SJ; Onuchic V; Polak P; Rajagopal N; Ray P; Sallari RC; Siebenthall KT; Sinnott-Armstrong NA; Stevens M; Thurman RE; Wu J; Zhang B; Zhou X; Beaudet AE; Boyer LA; De Jager PL; Farnham PJ; Fisher SJ; Haussler D; Jones SJ; Li W; Marra MA; McManus MT; Sunyaev S; Thomson JA; Tlsty TD; Tsai LH; Wang W; Waterland RA; Zhang MQ; Chadwick LH; Bernstein BE; Costello JF; Ecker JR; Hirst M; Meissner A; Milosavljevic A; Ren B; Stamatoyannopoulos JA; Wang T; Kellis M
Nature; 2015 Feb; 518(7539):317-30. PubMed ID: 25693563
[TBL] [Abstract][Full Text] [Related]
14. Development and application of an integrated allele-specific pipeline for methylomic and epigenomic analysis (MEA).
Richard Albert J; Koike T; Younesy H; Thompson R; Bogutz AB; Karimi MM; Lorincz MC
BMC Genomics; 2018 Jun; 19(1):463. PubMed ID: 29907088
[TBL] [Abstract][Full Text] [Related]
15. Inherent genomic properties underlie the epigenomic heterogeneity of human induced pluripotent stem cells.
Yokobayashi S; Yabuta Y; Nakagawa M; Okita K; Hu B; Murase Y; Nakamura T; Bourque G; Majewski J; Yamamoto T; Saitou M
Cell Rep; 2021 Nov; 37(5):109909. PubMed ID: 34731633
[TBL] [Abstract][Full Text] [Related]
16. Long-range massively parallel mate pair sequencing detects distinct mutations and similar patterns of structural mutability in two breast cancer cell lines.
Hampton OA; Koriabine M; Miller CA; Coarfa C; Li J; Den Hollander P; Schoenherr C; Carbone L; Nefedov M; Ten Hallers BF; Lee AV; De Jong PJ; Milosavljevic A
Cancer Genet; 2011 Aug; 204(8):447-57. PubMed ID: 21962895
[TBL] [Abstract][Full Text] [Related]
17. Mapping human epigenomes.
Rivera CM; Ren B
Cell; 2013 Sep; 155(1):39-55. PubMed ID: 24074860
[TBL] [Abstract][Full Text] [Related]
18. Understanding variation in transcription factor binding by modeling transcription factor genome-epigenome interactions.
Chen CC; Xiao S; Xie D; Cao X; Song CX; Wang T; He C; Zhong S
PLoS Comput Biol; 2013; 9(12):e1003367. PubMed ID: 24339764
[TBL] [Abstract][Full Text] [Related]
19. IMPACT: Genomic Annotation of Cell-State-Specific Regulatory Elements Inferred from the Epigenome of Bound Transcription Factors.
Amariuta T; Luo Y; Gazal S; Davenport EE; van de Geijn B; Ishigaki K; Westra HJ; Teslovich N; Okada Y; Yamamoto K; ; Price AL; Raychaudhuri S
Am J Hum Genet; 2019 May; 104(5):879-895. PubMed ID: 31006511
[TBL] [Abstract][Full Text] [Related]
20. An integrated genomics analysis of epigenetic subtypes in human breast tumors links DNA methylation patterns to chromatin states in normal mammary cells.
Holm K; Staaf J; Lauss M; Aine M; Lindgren D; Bendahl PO; Vallon-Christersson J; Barkardottir RB; Höglund M; Borg Å; Jönsson G; Ringnér M
Breast Cancer Res; 2016 Feb; 18(1):27. PubMed ID: 26923702
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]