Terms: = Brain cancer AND CTCF, P49711, 10664, ENSG00000102974
33 results:
1. Differential methylation analysis in neuropathologically confirmed dementia with Lewy bodies.
Reho P; Saez-Atienzar S; Ruffo P; Solaiman S; Shah Z; Chia R; Kaivola K; Traynor BJ; Tilley BS; Gentleman SM; Hodges AK; Aarsland D; Monuki ES; Newell KL; Woltjer R; Albert MS; Dawson TM; Rosenthal LS; Troncoso JC; Pletnikova O; Serrano GE; Beach TG; Easwaran HP; Scholz SW
Commun Biol; 2024 Jan; 7(1):35. PubMed ID: 38182665
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2. Modeling epigenetic lesions that cause gliomas.
Rahme GJ; Javed NM; Puorro KL; Xin S; Hovestadt V; Johnstone SE; Bernstein BE
Cell; 2023 Aug; 186(17):3674-3685.e14. PubMed ID: 37494934
[TBL] [Abstract] [Full Text] [Related]
3. 3D genome mapping identifies subgroup-specific chromosome conformations and tumor-dependency genes in ependymoma.
Okonechnikov K; Camgöz A; Chapman O; Wani S; Park DE; Hübner JM; Chakraborty A; Pagadala M; Bump R; Chandran S; Kraft K; Acuna-Hidalgo R; Reid D; Sikkink K; Mauermann M; Juarez EF; Jenseit A; Robinson JT; Pajtler KW; Milde T; Jäger N; Fiesel P; Morgan L; Sridhar S; Coufal NG; Levy M; Malicki D; Hobbs C; Kingsmore S; Nahas S; Snuderl M; Crawford J; Wechsler-Reya RJ; Davidson TB; Cotter J; Michaiel G; Fleischhack G; Mundlos S; Schmitt A; Carter H; Michealraj KA; Kumar SA; Taylor MD; Rich J; Buchholz F; Mesirov JP; Pfister SM; Ay F; Dixon JR; Kool M; Chavez L
Nat Commun; 2023 Apr; 14(1):2300. PubMed ID: 37085539
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4. Expansion of the genotypic and phenotypic spectrum of ctcf-related disorder guides clinical management: 43 new subjects and a comprehensive literature review.
Valverde de Morales HG; Wang HV; Garber K; Cheng X; Corces VG; Li H
Am J Med Genet A; 2023 Mar; 191(3):718-729. PubMed ID: 36454652
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5. Data mining of bulk and single-cell RNA sequencing introduces OBI1-AS1 as an astrocyte marker with possible role in glioma recurrence and progression.
Mamivand A; Bayat S; Maghrouni A; Shabani S; Khoshnevisan A; Saffar H; Tabrizi M
Clin Epigenetics; 2022 Mar; 14(1):35. PubMed ID: 35260196
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6. DNA 5-hydroxymethylcytosine in pediatric central nervous system tumors may impact tumor classification and is a positive prognostic marker.
Azizgolshani N; Petersen CL; Chen Y; Levy JJ; Salas LA; Perreard L; Nguyen LN; Christensen BC
Clin Epigenetics; 2021 Sep; 13(1):176. PubMed ID: 34538273
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7. Genomic Space of
Ibrahim Al-Obaide MA; Arutla V; Bacolod MD; Wang W; Zhang R; Srivenugopal KS
Int J Mol Sci; 2021 Mar; 22(5):. PubMed ID: 33801310
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8. The Transition from Quiescent to Activated States in Human Hematopoietic Stem Cells Is Governed by Dynamic 3D Genome Reorganization.
Takayama N; Murison A; Takayanagi SI; Arlidge C; Zhou S; Garcia-Prat L; Chan-Seng-Yue M; Zandi S; Gan OI; Boutzen H; Kaufmann KB; Trotman-Grant A; Schoof E; Kron K; Díaz N; Lee JJY; Medina T; De Carvalho DD; Taylor MD; Vaquerizas JM; Xie SZ; Dick JE; Lupien M
Cell Stem Cell; 2021 Mar; 28(3):488-501.e10. PubMed ID: 33242413
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9. A map of cis-regulatory elements and 3D genome structures in zebrafish.
Yang H; Luan Y; Liu T; Lee HJ; Fang L; Wang Y; Wang X; Zhang B; Jin Q; Ang KC; Xing X; Wang J; Xu J; Song F; Sriranga I; Khunsriraksakul C; Salameh T; Li D; Choudhary MNK; Topczewski J; Wang K; Gerhard GS; Hardison RC; Wang T; Cheng KC; Yue F
Nature; 2020 Dec; 588(7837):337-343. PubMed ID: 33239788
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10. Allele-specific DNA methylation is increased in cancers and its dense mapping in normal plus neoplastic cells increases the yield of disease-associated regulatory SNPs.
Do C; Dumont ELP; Salas M; Castano A; Mujahed H; Maldonado L; Singh A; DaSilva-Arnold SC; Bhagat G; Lehman S; Christiano AM; Madhavan S; Nagy PL; Green PHR; Feinman R; Trimble C; Illsley NP; Marder K; Honig L; Monk C; Goy A; Chow K; Goldlust S; Kaptain G; Siegel D; Tycko B
Genome Biol; 2020 Jun; 21(1):153. PubMed ID: 32594908
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11. The genomic landscape of metastatic breast cancer: Insights from 11,000 tumors.
Rinaldi J; Sokol ES; Hartmaier RJ; Trabucco SE; Frampton GM; Goldberg ME; Albacker LA; Daemen A; Manning G
PLoS One; 2020; 15(5):e0231999. PubMed ID: 32374727
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12. Epigenome editing strategies for the functional annotation of ctcf insulators.
Tarjan DR; Flavahan WA; Bernstein BE
Nat Commun; 2019 Sep; 10(1):4258. PubMed ID: 31534142
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13. The cancer driver genes IDH1/2, JARID1C/ KDM5C, and UTX/ KDM6A: crosstalk between histone demethylation and hypoxic reprogramming in cancer metabolism.
Chang S; Yim S; Park H
Exp Mol Med; 2019 Jun; 51(6):1-17. PubMed ID: 31221981
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14. Epigenetic influences on aging: a longitudinal genome-wide methylation study in old Swedish twins.
Wang Y; Karlsson R; Lampa E; Zhang Q; Hedman ÅK; Almgren M; Almqvist C; McRae AF; Marioni RE; Ingelsson E; Visscher PM; Deary IJ; Lind L; Morris T; Beck S; Pedersen NL; Hägg S
Epigenetics; 2018; 13(9):975-987. PubMed ID: 30264654
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15. Bivalent Chromatin Domains in Glioblastoma Reveal a Subtype-Specific Signature of Glioma Stem Cells.
Hall AW; Battenhouse AM; Shivram H; Morris AR; Cowperthwaite MC; Shpak M; Iyer VR
Cancer Res; 2018 May; 78(10):2463-2474. PubMed ID: 29549165
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16. Developmentally linked human DNA hypermethylation is associated with down-modulation, repression, and upregulation of transcription.
Baribault C; Ehrlich KC; Ponnaluri VKC; Pradhan S; Lacey M; Ehrlich M
Epigenetics; 2018; 13(3):275-289. PubMed ID: 29498561
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17. Identification and characterization of two functional variants in the human longevity gene FOXO3.
Flachsbart F; Dose J; Gentschew L; Geismann C; Caliebe A; Knecht C; Nygaard M; Badarinarayan N; ElSharawy A; May S; Luzius A; Torres GG; Jentzsch M; Forster M; Häsler R; Pallauf K; Lieb W; Derbois C; Galan P; Drichel D; Arlt A; Till A; Krause-Kyora B; Rimbach G; Blanché H; Deleuze JF; Christiansen L; Christensen K; Nothnagel M; Rosenstiel P; Schreiber S; Franke A; Sebens S; Nebel A
Nat Commun; 2017 Dec; 8(1):2063. PubMed ID: 29234056
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18. Low-Grade Astrocytoma Mutations in IDH1, P53, and ATRX Cooperate to Block Differentiation of Human Neural Stem Cells via Repression of SOX2.
Modrek AS; Golub D; Khan T; Bready D; Prado J; Bowman C; Deng J; Zhang G; Rocha PP; Raviram R; Lazaris C; Stafford JM; LeRoy G; Kader M; Dhaliwal J; Bayin NS; Frenster JD; Serrano J; Chiriboga L; Baitalmal R; Nanjangud G; Chi AS; Golfinos JG; Wang J; Karajannis MA; Bonneau RA; Reinberg D; Tsirigos A; Zagzag D; Snuderl M; Skok JA; Neubert TA; Placantonakis DG
Cell Rep; 2017 Oct; 21(5):1267-1280. PubMed ID: 29091765
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19. The methyltransferase SETDB1 regulates a large neuron-specific topological chromatin domain.
Jiang Y; Loh YE; Rajarajan P; Hirayama T; Liao W; Kassim BS; Javidfar B; Hartley BJ; Kleofas L; Park RB; Labonte B; Ho SM; Chandrasekaran S; Do C; Ramirez BR; Peter CJ; C W JT; Safaie BM; Morishita H; Roussos P; Nestler EJ; Schaefer A; Tycko B; Brennand KJ; Yagi T; Shen L; Akbarian S
Nat Genet; 2017 Aug; 49(8):1239-1250. PubMed ID: 28671686
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20. Genetic-epigenetic interactions in cis: a major focus in the post-GWAS era.
Do C; Shearer A; Suzuki M; Terry MB; Gelernter J; Greally JM; Tycko B
Genome Biol; 2017 Jun; 18(1):120. PubMed ID: 28629478
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