BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

333 related articles for article (PubMed ID: 10047483)

  • 21. Molecular dynamics simulations of A. T-rich oligomers: sequence-specific binding of Na+ in the minor groove of B-DNA.
    Mocci F; Saba G
    Biopolymers; 2003 Apr; 68(4):471-85. PubMed ID: 12666173
    [TBL] [Abstract][Full Text] [Related]  

  • 22. Hydration and recognition of methylated CpG steps in DNA.
    Mayer-Jung C; Moras D; Timsit Y
    EMBO J; 1998 May; 17(9):2709-18. PubMed ID: 9564052
    [TBL] [Abstract][Full Text] [Related]  

  • 23. Structural equilibrium of DNA represented with different force fields.
    Feig M; Pettitt BM
    Biophys J; 1998 Jul; 75(1):134-49. PubMed ID: 9649374
    [TBL] [Abstract][Full Text] [Related]  

  • 24. Molecular dynamics simulation of 8-oxoguanine containing DNA fragments reveals altered hydration and ion binding patterns.
    Naômé A; Schyman P; Laaksonen A; Vercauteren DP
    J Phys Chem B; 2010 Apr; 114(14):4789-801. PubMed ID: 20307074
    [TBL] [Abstract][Full Text] [Related]  

  • 25. Molecular dynamics simulation study of oriented polyamine- and Na-DNA: sequence specific interactions and effects on DNA structure.
    Korolev N; Lyubartsev AP; Laaksonen A; Nordenskiöld L
    Biopolymers; 2004 Apr; 73(5):542-55. PubMed ID: 15048778
    [TBL] [Abstract][Full Text] [Related]  

  • 26. 1 A crystal structures of B-DNA reveal sequence-specific binding and groove-specific bending of DNA by magnesium and calcium.
    Chiu TK; Dickerson RE
    J Mol Biol; 2000 Aug; 301(4):915-45. PubMed ID: 10966796
    [TBL] [Abstract][Full Text] [Related]  

  • 27. [Monte-Carlo simulation of hydration of nucleic acid fragments].
    Teplukhin AV; Poltev VI; Malenkov GG
    Mol Biol (Mosk); 1990; 24(3):832-46. PubMed ID: 2402241
    [TBL] [Abstract][Full Text] [Related]  

  • 28. Relationship of DNA structure to internal dynamics: correlation of helical parameters from NOE-based NMR solution structures of d(GCGTACGC)(2) and d(CGCTAGCG)(2) with (13)C order parameters implies conformational coupling in dinucleotide units.
    Isaacs RJ; Spielmann HP
    J Mol Biol; 2001 Mar; 307(2):525-40. PubMed ID: 11254380
    [TBL] [Abstract][Full Text] [Related]  

  • 29. A connected-cluster of hydration around myoglobin: correlation between molecular dynamics simulations and experiment.
    Lounnas V; Pettitt BM
    Proteins; 1994 Feb; 18(2):133-47. PubMed ID: 8159663
    [TBL] [Abstract][Full Text] [Related]  

  • 30. Molecular dynamics simulations of B-DNA: an analysis of the role of initial molecular configuration, randomly assigned velocity distribution, long integration times, and nonconstrained termini.
    Falsafi S; Reich NO
    Biopolymers; 1993 Mar; 33(3):459-73. PubMed ID: 8461453
    [TBL] [Abstract][Full Text] [Related]  

  • 31. Titration in silico of reversible B <=> A transitions in DNA.
    Mazur AK
    J Am Chem Soc; 2003 Jul; 125(26):7849-59. PubMed ID: 12823003
    [TBL] [Abstract][Full Text] [Related]  

  • 32. The hydration of nucleic acid duplexes as assessed by a combination of volumetric and structural techniques.
    Chalikian TV; Völker J; Srinivasan AR; Olson WK; Breslauer KJ
    Biopolymers; 1999 Oct; 50(5):459-71. PubMed ID: 10479730
    [TBL] [Abstract][Full Text] [Related]  

  • 33. Comparison of major groove hydration in isomorphous A-DNA octamers and dependence on base sequence and local helix geometry.
    Tippin DB; Sundaralingam M
    Biochemistry; 1997 Jan; 36(3):536-43. PubMed ID: 9012669
    [TBL] [Abstract][Full Text] [Related]  

  • 34. Free-energy perturbation methods to study structure and energetics of DNA adducts: results for the major N2-dG adduct of benzo[a]pyrene in two conformations and different sequence contexts.
    Chandani S; Lee CH; Loechler EL
    Chem Res Toxicol; 2005 Jul; 18(7):1108-23. PubMed ID: 16022503
    [TBL] [Abstract][Full Text] [Related]  

  • 35. The crystal structure of the trigonal decamer C-G-A-T-C-G-6meA-T-C-G: a B-DNA helix with 10.6 base-pairs per turn.
    Baikalov I; Grzeskowiak K; Yanagi K; Quintana J; Dickerson RE
    J Mol Biol; 1993 Jun; 231(3):768-84. PubMed ID: 8515450
    [TBL] [Abstract][Full Text] [Related]  

  • 36. Water regulation of actinomycin-D binding to DNA: the interplay among drug affinity, DNA long-range conformation, and hydration.
    Ruggiero Neto J; Colombo MF
    Biopolymers; 2000 Jan; 53(1):46-59. PubMed ID: 10644950
    [TBL] [Abstract][Full Text] [Related]  

  • 37. Hydration of DNA bases: analysis of crystallographic data.
    Schneider B; Cohen D; Berman HM
    Biopolymers; 1992 Jul; 32(7):725-50. PubMed ID: 1391627
    [TBL] [Abstract][Full Text] [Related]  

  • 38. Structure and hydration of BamHI DNA recognition site: a molecular dynamics investigation.
    Castrignanò T; Chillemi G; Desideri A
    Biophys J; 2000 Sep; 79(3):1263-72. PubMed ID: 10968990
    [TBL] [Abstract][Full Text] [Related]  

  • 39. Spermine: an "invisible" component in the crystals of B-DNA. A grand canonical Monte Carlo and molecular dynamics simulation study.
    Korolev N; Lyubartsev AP; Nordenskiöld L; Laaksonen A
    J Mol Biol; 2001 May; 308(5):907-17. PubMed ID: 11352581
    [TBL] [Abstract][Full Text] [Related]  

  • 40. Sodium and chlorine ions as part of the DNA solvation shell.
    Feig M; Pettitt BM
    Biophys J; 1999 Oct; 77(4):1769-81. PubMed ID: 10512802
    [TBL] [Abstract][Full Text] [Related]  

    [Previous]   [Next]    [New Search]
    of 17.