342 related articles for article (PubMed ID: 10068694)
1. E-CELL: software environment for whole-cell simulation.
Tomita M; Hashimoto K; Takahashi K; Shimizu TS; Matsuzaki Y; Miyoshi F; Saito K; Tanida S; Yugi K; Venter JC; Hutchison CA
Bioinformatics; 1999 Jan; 15(1):72-84. PubMed ID: 10068694
[TBL] [Abstract][Full Text] [Related]
2. E-CELL: Software Environment for Whole Cell Simulation.
Tomita M; Hashimoto K; Takahashi K; Shimizu T; Matsuzaki Y; Miyoshi F; Saito K; Tanida S; Yugi K; Venter JC; Hutchison CA
Genome Inform Ser Workshop Genome Inform; 1997; 8():147-155. PubMed ID: 11072314
[TBL] [Abstract][Full Text] [Related]
3. Simulating cellular dynamics through a coupled transcription, translation, metabolic model.
Weitzke EL; Ortoleva PJ
Comput Biol Chem; 2003 Oct; 27(4-5):469-80. PubMed ID: 14642755
[TBL] [Abstract][Full Text] [Related]
4. Modular modeling of cellular systems with ProMoT/Diva.
Ginkel M; Kremling A; Nutsch T; Rehner R; Gilles ED
Bioinformatics; 2003 Jun; 19(9):1169-76. PubMed ID: 12801880
[TBL] [Abstract][Full Text] [Related]
5. The Karyote physico-chemical genomic, proteomic, metabolic cell modeling system.
Ortoleva P; Berry E; Brun Y; Fan J; Fontus M; Hubbard K; Jaqaman K; Jarymowycz L; Navid A; Sayyed-Ahmad A; Shreif Z; Stanley F; Tuncay K; Weitzke E; Wu LC
OMICS; 2003; 7(3):269-83. PubMed ID: 14583116
[TBL] [Abstract][Full Text] [Related]
6. WebCell: a web-based environment for kinetic modeling and dynamic simulation of cellular networks.
Lee DY; Yun C; Cho A; Hou BK; Park S; Lee SY
Bioinformatics; 2006 May; 22(9):1150-1. PubMed ID: 16543278
[TBL] [Abstract][Full Text] [Related]
7. Cell++--simulating biochemical pathways.
Sanford C; Yip ML; White C; Parkinson J
Bioinformatics; 2006 Dec; 22(23):2918-25. PubMed ID: 17038347
[TBL] [Abstract][Full Text] [Related]
8. OBIYagns: a grid-based biochemical simulator with a parameter estimator.
Kimura S; Kawasaki T; Hatakeyama M; Naka T; Konishi F; Konagaya A
Bioinformatics; 2004 Jul; 20(10):1646-8. PubMed ID: 14962919
[TBL] [Abstract][Full Text] [Related]
9. BioMiner--modeling, analyzing, and visualizing biochemical pathways and networks.
Sirava M; Schäfer T; Eiglsperger M; Kaufmann M; Kohlbacher O; Bornberg-Bauer E; Lenhof HP
Bioinformatics; 2002; 18 Suppl 2():S219-30. PubMed ID: 12386006
[TBL] [Abstract][Full Text] [Related]
10. Stochastic simulation GUI for biochemical networks.
Vallabhajosyula RR; Sauro HM
Bioinformatics; 2007 Jul; 23(14):1859-61. PubMed ID: 17586553
[TBL] [Abstract][Full Text] [Related]
11. Dynamic cellular automata: an alternative approach to cellular simulation.
Wishart DS; Yang R; Arndt D; Tang P; Cruz J
In Silico Biol; 2005; 5(2):139-61. PubMed ID: 15972011
[TBL] [Abstract][Full Text] [Related]
12. MONALISA for stochastic simulations of Petri net models of biochemical systems.
Balazki P; Lindauer K; Einloft J; Ackermann J; Koch I
BMC Bioinformatics; 2015 Jul; 16():215. PubMed ID: 26156221
[TBL] [Abstract][Full Text] [Related]
13. CAGER: classification analysis of gene expression regulation using multiple information sources.
Ruan J; Zhang W
BMC Bioinformatics; 2005 May; 6():114. PubMed ID: 15890068
[TBL] [Abstract][Full Text] [Related]
14. BIOCHAM: an environment for modeling biological systems and formalizing experimental knowledge.
Calzone L; Fages F; Soliman S
Bioinformatics; 2006 Jul; 22(14):1805-7. PubMed ID: 16672256
[TBL] [Abstract][Full Text] [Related]
15. The use of microsoft excel as a user interface for biological simulations.
Tack G; Roselli RJ; Overholser KA; Harris TR
Comput Biomed Res; 1995 Feb; 28(1):24-37. PubMed ID: 7614822
[TBL] [Abstract][Full Text] [Related]
16. A model diagram layout extension for SBML.
Gauges R; Rost U; Sahle S; Wegner K
Bioinformatics; 2006 Aug; 22(15):1879-85. PubMed ID: 16709586
[TBL] [Abstract][Full Text] [Related]
17. Cellware--a multi-algorithmic software for computational systems biology.
Dhar P; Meng TC; Somani S; Ye L; Sairam A; Chitre M; Hao Z; Sakharkar K
Bioinformatics; 2004 May; 20(8):1319-21. PubMed ID: 14871872
[TBL] [Abstract][Full Text] [Related]
18. YANA - a software tool for analyzing flux modes, gene-expression and enzyme activities.
Schwarz R; Musch P; von Kamp A; Engels B; Schirmer H; Schuster S; Dandekar T
BMC Bioinformatics; 2005 Jun; 6():135. PubMed ID: 15929789
[TBL] [Abstract][Full Text] [Related]
19. A general computational model of mitochondrial metabolism in a whole organelle scale.
Yugi K; Tomita M
Bioinformatics; 2004 Jul; 20(11):1795-6. PubMed ID: 14962921
[TBL] [Abstract][Full Text] [Related]
20. RuleMonkey: software for stochastic simulation of rule-based models.
Colvin J; Monine MI; Gutenkunst RN; Hlavacek WS; Von Hoff DD; Posner RG
BMC Bioinformatics; 2010 Jul; 11():404. PubMed ID: 20673321
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]
