155 related articles for article (PubMed ID: 10219084)
1. Configuration of the catalytic GIY-YIG domain of intron endonuclease I-TevI: coincidence of computational and molecular findings.
Kowalski JC; Belfort M; Stapleton MA; Holpert M; Dansereau JT; Pietrokovski S; Baxter SM; Derbyshire V
Nucleic Acids Res; 1999 May; 27(10):2115-25. PubMed ID: 10219084
[TBL] [Abstract][Full Text] [Related]
2. Catalytic domain structure and hypothesis for function of GIY-YIG intron endonuclease I-TevI.
Van Roey P; Meehan L; Kowalski JC; Belfort M; Derbyshire V
Nat Struct Biol; 2002 Nov; 9(11):806-11. PubMed ID: 12379841
[TBL] [Abstract][Full Text] [Related]
3. Two-domain structure of the td intron-encoded endonuclease I-TevI correlates with the two-domain configuration of the homing site.
Derbyshire V; Kowalski JC; Dansereau JT; Hauer CR; Belfort M
J Mol Biol; 1997 Feb; 265(5):494-506. PubMed ID: 9048944
[TBL] [Abstract][Full Text] [Related]
4. Three-dimensional modeling of the I-TevI homing endonuclease catalytic domain, a GIY-YIG superfamily member, using NMR restraints and Monte Carlo dynamics.
Bujnicki JM; Rotkiewicz P; Kolinski A; Rychlewski L
Protein Eng; 2001 Oct; 14(10):717-21. PubMed ID: 11739889
[TBL] [Abstract][Full Text] [Related]
5. Distance determination by GIY-YIG intron endonucleases: discrimination between repression and cleavage functions.
Liu Q; Derbyshire V; Belfort M; Edgell DR
Nucleic Acids Res; 2006; 34(6):1755-64. PubMed ID: 16582101
[TBL] [Abstract][Full Text] [Related]
6. Amino acid residues in the GIY-YIG endonuclease II of phage T4 affecting sequence recognition and binding as well as catalysis.
Lagerbäck P; Carlson K
J Bacteriol; 2008 Aug; 190(16):5533-44. PubMed ID: 18539732
[TBL] [Abstract][Full Text] [Related]
7. Strand-specific contacts and divalent metal ion regulate double-strand break formation by the GIY-YIG homing endonuclease I-BmoI.
Carter JM; Friedrich NC; Kleinstiver B; Edgell DR
J Mol Biol; 2007 Nov; 374(2):306-21. PubMed ID: 17936302
[TBL] [Abstract][Full Text] [Related]
8. Type II restriction endonuclease R.Eco29kI is a member of the GIY-YIG nuclease superfamily.
Ibryashkina EM; Zakharova MV; Baskunov VB; Bogdanova ES; Nagornykh MO; Den'mukhamedov MM; Melnik BS; Kolinski A; Gront D; Feder M; Solonin AS; Bujnicki JM
BMC Struct Biol; 2007 Jul; 7():48. PubMed ID: 17626614
[TBL] [Abstract][Full Text] [Related]
9. Biochemical and mutagenic analysis of I-CreII reveals distinct but important roles for both the H-N-H and GIY-YIG motifs.
Corina LE; Qiu W; Desai A; Herrin DL
Nucleic Acids Res; 2009 Sep; 37(17):5810-21. PubMed ID: 19651876
[TBL] [Abstract][Full Text] [Related]
10. Structural insights into the first incision reaction during nucleotide excision repair.
Truglio JJ; Rhau B; Croteau DL; Wang L; Skorvaga M; Karakas E; DellaVecchia MJ; Wang H; Van Houten B; Kisker C
EMBO J; 2005 Mar; 24(5):885-94. PubMed ID: 15692561
[TBL] [Abstract][Full Text] [Related]
11. A unified genetic, computational and experimental framework identifies functionally relevant residues of the homing endonuclease I-BmoI.
Kleinstiver BP; Fernandes AD; Gloor GB; Edgell DR
Nucleic Acids Res; 2010 Apr; 38(7):2411-27. PubMed ID: 20061372
[TBL] [Abstract][Full Text] [Related]
12. The monomeric GIY-YIG homing endonuclease I-BmoI uses a molecular anchor and a flexible tether to sequentially nick DNA.
Kleinstiver BP; Wolfs JM; Edgell DR
Nucleic Acids Res; 2013 May; 41(10):5413-27. PubMed ID: 23558745
[TBL] [Abstract][Full Text] [Related]
13. Role of the interdomain linker in distance determination for remote cleavage by homing endonuclease I-TevI.
Liu Q; Dansereau JT; Puttamadappa SS; Shekhtman A; Derbyshire V; Belfort M
J Mol Biol; 2008 Jun; 379(5):1094-106. PubMed ID: 18499124
[TBL] [Abstract][Full Text] [Related]
14. Perpetuating the homing endonuclease life cycle: identification of mutations that modulate and change I-TevI cleavage preference.
Roy AC; Wilson GG; Edgell DR
Nucleic Acids Res; 2016 Sep; 44(15):7350-9. PubMed ID: 27387281
[TBL] [Abstract][Full Text] [Related]
15. Folding, DNA recognition, and function of GIY-YIG endonucleases: crystal structures of R.Eco29kI.
Mak AN; Lambert AR; Stoddard BL
Structure; 2010 Oct; 18(10):1321-31. PubMed ID: 20800503
[TBL] [Abstract][Full Text] [Related]
16. Oligomeric structure diversity within the GIY-YIG nuclease family.
Ibryashkina EM; Sasnauskas G; Solonin AS; Zakharova MV; Siksnys V
J Mol Biol; 2009 Mar; 387(1):10-6. PubMed ID: 19361436
[TBL] [Abstract][Full Text] [Related]
17. Type II restriction endonuclease R.Hpy188I belongs to the GIY-YIG nuclease superfamily, but exhibits an unusual active site.
Kaminska KH; Kawai M; Boniecki M; Kobayashi I; Bujnicki JM
BMC Struct Biol; 2008 Nov; 8():48. PubMed ID: 19014591
[TBL] [Abstract][Full Text] [Related]
18. Related homing endonucleases I-BmoI and I-TevI use different strategies to cleave homologous recognition sites.
Edgell DR; Shub DA
Proc Natl Acad Sci U S A; 2001 Jul; 98(14):7898-903. PubMed ID: 11416170
[TBL] [Abstract][Full Text] [Related]
19. Coincidence of cleavage sites of intron endonuclease I-TevI and critical sequences of the host thymidylate synthase gene.
Edgell DR; Stanger MJ; Belfort M
J Mol Biol; 2004 Nov; 343(5):1231-41. PubMed ID: 15491609
[TBL] [Abstract][Full Text] [Related]
20. Intronic GIY-YIG endonuclease gene in the mitochondrial genome of Podospora curvicolla: evidence for mobility.
Saguez C; Lecellier G; Koll F
Nucleic Acids Res; 2000 Mar; 28(6):1299-306. PubMed ID: 10684923
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]
