BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

77 related articles for article (PubMed ID: 10320403)

  • 1. MIAH: automatic alignment of eukaryotic SSU rRNAs.
    Thébault P; Monestié P; McGrath A; Higgins DG
    Bioinformatics; 1999 Apr; 15(4):341-2. PubMed ID: 10320403
    [TBL] [Abstract][Full Text] [Related]  

  • 2. Optimization of ribosomal RNA profile alignments.
    O'Brien EA; Notredame C; Higgins DG
    Bioinformatics; 1998; 14(4):332-41. PubMed ID: 9632828
    [TBL] [Abstract][Full Text] [Related]  

  • 3. Empirical estimation of the reliability of ribosomal RNA alignments.
    O'Brien EA; Higgins DG
    Bioinformatics; 1998; 14(10):830-8. PubMed ID: 9927711
    [TBL] [Abstract][Full Text] [Related]  

  • 4. jPHYDIT: a JAVA-based integrated environment for molecular phylogeny of ribosomal RNA sequences.
    Jeon YS; Chung H; Park S; Hur I; Lee JH; Chun J
    Bioinformatics; 2005 Jul; 21(14):3171-3. PubMed ID: 15855247
    [TBL] [Abstract][Full Text] [Related]  

  • 5. INFO-RNA--a server for fast inverse RNA folding satisfying sequence constraints.
    Busch A; Backofen R
    Nucleic Acids Res; 2007 Jul; 35(Web Server issue):W310-3. PubMed ID: 17452349
    [TBL] [Abstract][Full Text] [Related]  

  • 6. CLOURE: Clustal Output Reformatter, a program for reformatting ClustalX/ClustalW outputs for SNP analysis and molecular systematics.
    Kohli DK; Bachhawat AK
    Nucleic Acids Res; 2003 Jul; 31(13):3501-2. PubMed ID: 12824353
    [TBL] [Abstract][Full Text] [Related]  

  • 7. RibAlign: a software tool and database for eubacterial phylogeny based on concatenated ribosomal protein subunits.
    Teeling H; Gloeckner FO
    BMC Bioinformatics; 2006 Feb; 7():66. PubMed ID: 16476165
    [TBL] [Abstract][Full Text] [Related]  

  • 8. The FOLDALIGN web server for pairwise structural RNA alignment and mutual motif search.
    Havgaard JH; Lyngsø RB; Gorodkin J
    Nucleic Acids Res; 2005 Jul; 33(Web Server issue):W650-3. PubMed ID: 15980555
    [TBL] [Abstract][Full Text] [Related]  

  • 9. RNASAlign: RNA structural alignment system.
    Wong TK; Wan KL; Hsu BY; Cheung BW; Hon WK; Lam TW; Yiu SM
    Bioinformatics; 2011 Aug; 27(15):2151-2. PubMed ID: 21659321
    [TBL] [Abstract][Full Text] [Related]  

  • 10. Murlet: a practical multiple alignment tool for structural RNA sequences.
    Kiryu H; Tabei Y; Kin T; Asai K
    Bioinformatics; 2007 Jul; 23(13):1588-98. PubMed ID: 17459961
    [TBL] [Abstract][Full Text] [Related]  

  • 11. Ribosomal RNA as molecular barcodes: a simple correlation analysis without sequence alignment.
    Chu KH; Li CP; Qi J
    Bioinformatics; 2006 Jul; 22(14):1690-701. PubMed ID: 16613905
    [TBL] [Abstract][Full Text] [Related]  

  • 12. Tcoffee@igs: A web server for computing, evaluating and combining multiple sequence alignments.
    Poirot O; O'Toole E; Notredame C
    Nucleic Acids Res; 2003 Jul; 31(13):3503-6. PubMed ID: 12824354
    [TBL] [Abstract][Full Text] [Related]  

  • 13. SCARNA: fast and accurate structural alignment of RNA sequences by matching fixed-length stem fragments.
    Tabei Y; Tsuda K; Kin T; Asai K
    Bioinformatics; 2006 Jul; 22(14):1723-9. PubMed ID: 16690634
    [TBL] [Abstract][Full Text] [Related]  

  • 14. Foldalign 2.5: multithreaded implementation for pairwise structural RNA alignment.
    Sundfeld D; Havgaard JH; de Melo AC; Gorodkin J
    Bioinformatics; 2016 Apr; 32(8):1238-40. PubMed ID: 26704597
    [TBL] [Abstract][Full Text] [Related]  

  • 15. A memory efficient method for structure-based RNA multiple alignment.
    DeBlasio D; Bruand J; Zhang S
    IEEE/ACM Trans Comput Biol Bioinform; 2012; 9(1):1-11. PubMed ID: 21576754
    [TBL] [Abstract][Full Text] [Related]  

  • 16. Local RNA base pairing probabilities in large sequences.
    Bernhart SH; Hofacker IL; Stadler PF
    Bioinformatics; 2006 Mar; 22(5):614-5. PubMed ID: 16368769
    [TBL] [Abstract][Full Text] [Related]  

  • 17. Multiple structural alignment and clustering of RNA sequences.
    Torarinsson E; Havgaard JH; Gorodkin J
    Bioinformatics; 2007 Apr; 23(8):926-32. PubMed ID: 17324941
    [TBL] [Abstract][Full Text] [Related]  

  • 18. Finding the common structure shared by two homologous RNAs.
    Perriquet O; Touzet H; Dauchet M
    Bioinformatics; 2003 Jan; 19(1):108-16. PubMed ID: 12499300
    [TBL] [Abstract][Full Text] [Related]  

  • 19. CorreLogo: an online server for 3D sequence logos of RNA and DNA alignments.
    Bindewald E; Schneider TD; Shapiro BA
    Nucleic Acids Res; 2006 Jul; 34(Web Server issue):W405-11. PubMed ID: 16845037
    [TBL] [Abstract][Full Text] [Related]  

  • 20. MASTR: multiple alignment and structure prediction of non-coding RNAs using simulated annealing.
    Lindgreen S; Gardner PP; Krogh A
    Bioinformatics; 2007 Dec; 23(24):3304-11. PubMed ID: 18006551
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 4.