1628 related articles for article (PubMed ID: 10329189)
1. Expanded sequence dependence of thermodynamic parameters improves prediction of RNA secondary structure.
Mathews DH; Sabina J; Zuker M; Turner DH
J Mol Biol; 1999 May; 288(5):911-40. PubMed ID: 10329189
[TBL] [Abstract][Full Text] [Related]
2. Dynalign: an algorithm for finding the secondary structure common to two RNA sequences.
Mathews DH; Turner DH
J Mol Biol; 2002 Mar; 317(2):191-203. PubMed ID: 11902836
[TBL] [Abstract][Full Text] [Related]
3. RNA secondary structure prediction based on free energy and phylogenetic analysis.
Juan V; Wilson C
J Mol Biol; 1999 Jun; 289(4):935-47. PubMed ID: 10369773
[TBL] [Abstract][Full Text] [Related]
4. Predicting a set of minimal free energy RNA secondary structures common to two sequences.
Mathews DH
Bioinformatics; 2005 May; 21(10):2246-53. PubMed ID: 15731207
[TBL] [Abstract][Full Text] [Related]
5. Thermodynamic characterization of the complete set of sequence symmetric tandem mismatches in RNA and an improved model for predicting the free energy contribution of sequence asymmetric tandem mismatches.
Christiansen ME; Znosko BM
Biochemistry; 2008 Apr; 47(14):4329-36. PubMed ID: 18330995
[TBL] [Abstract][Full Text] [Related]
6. Revolutions in RNA secondary structure prediction.
Mathews DH
J Mol Biol; 2006 Jun; 359(3):526-32. PubMed ID: 16500677
[TBL] [Abstract][Full Text] [Related]
7. Thermodynamic characterization of single mismatches found in naturally occurring RNA.
Davis AR; Znosko BM
Biochemistry; 2007 Nov; 46(46):13425-36. PubMed ID: 17958380
[TBL] [Abstract][Full Text] [Related]
8. An interactive framework for RNA secondary structure prediction with a dynamical treatment of constraints.
Gaspin C; Westhof E
J Mol Biol; 1995 Nov; 254(2):163-74. PubMed ID: 7490740
[TBL] [Abstract][Full Text] [Related]
9. Interpreting oligonucleotide microarray data to determine RNA secondary structure: application to the 3' end of Bombyx mori R2 RNA.
Duan S; Mathews DH; Turner DH
Biochemistry; 2006 Aug; 45(32):9819-32. PubMed ID: 16893182
[TBL] [Abstract][Full Text] [Related]
10. Cofolga: a genetic algorithm for finding the common folding of two RNAs.
Taneda A
Comput Biol Chem; 2005 Apr; 29(2):111-9. PubMed ID: 15833439
[TBL] [Abstract][Full Text] [Related]
11. A dynamic programming algorithm for RNA structure prediction including pseudoknots.
Rivas E; Eddy SR
J Mol Biol; 1999 Feb; 285(5):2053-68. PubMed ID: 9925784
[TBL] [Abstract][Full Text] [Related]
12. Efficient parameter estimation for RNA secondary structure prediction.
Andronescu M; Condon A; Hoos HH; Mathews DH; Murphy KP
Bioinformatics; 2007 Jul; 23(13):i19-28. PubMed ID: 17646296
[TBL] [Abstract][Full Text] [Related]
13. CONTRAfold: RNA secondary structure prediction without physics-based models.
Do CB; Woods DA; Batzoglou S
Bioinformatics; 2006 Jul; 22(14):e90-8. PubMed ID: 16873527
[TBL] [Abstract][Full Text] [Related]
14. Moments of the Boltzmann distribution for RNA secondary structures.
Miklós I; Meyer IM; Nagy B
Bull Math Biol; 2005 Sep; 67(5):1031-47. PubMed ID: 15998494
[TBL] [Abstract][Full Text] [Related]
15. Secondary structure prediction of interacting RNA molecules.
Andronescu M; Zhang ZC; Condon A
J Mol Biol; 2005 Feb; 345(5):987-1001. PubMed ID: 15644199
[TBL] [Abstract][Full Text] [Related]
16. FlexStem: improving predictions of RNA secondary structures with pseudoknots by reducing the search space.
Chen X; He SM; Bu D; Zhang F; Wang Z; Chen R; Gao W
Bioinformatics; 2008 Sep; 24(18):1994-2001. PubMed ID: 18586700
[TBL] [Abstract][Full Text] [Related]
17. The equilibrium partition function and base pair binding probabilities for RNA secondary structure.
McCaskill JS
Biopolymers; 1990; 29(6-7):1105-19. PubMed ID: 1695107
[TBL] [Abstract][Full Text] [Related]
18. Prediction of RNA secondary structure by free energy minimization.
Mathews DH; Turner DH
Curr Opin Struct Biol; 2006 Jun; 16(3):270-8. PubMed ID: 16713706
[TBL] [Abstract][Full Text] [Related]
19. The calculation of plant 5S rRNAs secondary structure.
Joachimiak A; Nalaskowska M; Barciszewska MZ; Mashkova TD; Barciszewski J
Acta Biochim Pol; 1989; 36(3-4):215-23. PubMed ID: 2485998
[TBL] [Abstract][Full Text] [Related]
20. Secondary structure prediction for aligned RNA sequences.
Hofacker IL; Fekete M; Stadler PF
J Mol Biol; 2002 Jun; 319(5):1059-66. PubMed ID: 12079347
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]