BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

1628 related articles for article (PubMed ID: 10329189)

  • 1. Expanded sequence dependence of thermodynamic parameters improves prediction of RNA secondary structure.
    Mathews DH; Sabina J; Zuker M; Turner DH
    J Mol Biol; 1999 May; 288(5):911-40. PubMed ID: 10329189
    [TBL] [Abstract][Full Text] [Related]  

  • 2. Dynalign: an algorithm for finding the secondary structure common to two RNA sequences.
    Mathews DH; Turner DH
    J Mol Biol; 2002 Mar; 317(2):191-203. PubMed ID: 11902836
    [TBL] [Abstract][Full Text] [Related]  

  • 3. RNA secondary structure prediction based on free energy and phylogenetic analysis.
    Juan V; Wilson C
    J Mol Biol; 1999 Jun; 289(4):935-47. PubMed ID: 10369773
    [TBL] [Abstract][Full Text] [Related]  

  • 4. Predicting a set of minimal free energy RNA secondary structures common to two sequences.
    Mathews DH
    Bioinformatics; 2005 May; 21(10):2246-53. PubMed ID: 15731207
    [TBL] [Abstract][Full Text] [Related]  

  • 5. Thermodynamic characterization of the complete set of sequence symmetric tandem mismatches in RNA and an improved model for predicting the free energy contribution of sequence asymmetric tandem mismatches.
    Christiansen ME; Znosko BM
    Biochemistry; 2008 Apr; 47(14):4329-36. PubMed ID: 18330995
    [TBL] [Abstract][Full Text] [Related]  

  • 6. Revolutions in RNA secondary structure prediction.
    Mathews DH
    J Mol Biol; 2006 Jun; 359(3):526-32. PubMed ID: 16500677
    [TBL] [Abstract][Full Text] [Related]  

  • 7. Thermodynamic characterization of single mismatches found in naturally occurring RNA.
    Davis AR; Znosko BM
    Biochemistry; 2007 Nov; 46(46):13425-36. PubMed ID: 17958380
    [TBL] [Abstract][Full Text] [Related]  

  • 8. An interactive framework for RNA secondary structure prediction with a dynamical treatment of constraints.
    Gaspin C; Westhof E
    J Mol Biol; 1995 Nov; 254(2):163-74. PubMed ID: 7490740
    [TBL] [Abstract][Full Text] [Related]  

  • 9. Interpreting oligonucleotide microarray data to determine RNA secondary structure: application to the 3' end of Bombyx mori R2 RNA.
    Duan S; Mathews DH; Turner DH
    Biochemistry; 2006 Aug; 45(32):9819-32. PubMed ID: 16893182
    [TBL] [Abstract][Full Text] [Related]  

  • 10. Cofolga: a genetic algorithm for finding the common folding of two RNAs.
    Taneda A
    Comput Biol Chem; 2005 Apr; 29(2):111-9. PubMed ID: 15833439
    [TBL] [Abstract][Full Text] [Related]  

  • 11. A dynamic programming algorithm for RNA structure prediction including pseudoknots.
    Rivas E; Eddy SR
    J Mol Biol; 1999 Feb; 285(5):2053-68. PubMed ID: 9925784
    [TBL] [Abstract][Full Text] [Related]  

  • 12. Efficient parameter estimation for RNA secondary structure prediction.
    Andronescu M; Condon A; Hoos HH; Mathews DH; Murphy KP
    Bioinformatics; 2007 Jul; 23(13):i19-28. PubMed ID: 17646296
    [TBL] [Abstract][Full Text] [Related]  

  • 13. CONTRAfold: RNA secondary structure prediction without physics-based models.
    Do CB; Woods DA; Batzoglou S
    Bioinformatics; 2006 Jul; 22(14):e90-8. PubMed ID: 16873527
    [TBL] [Abstract][Full Text] [Related]  

  • 14. Moments of the Boltzmann distribution for RNA secondary structures.
    Miklós I; Meyer IM; Nagy B
    Bull Math Biol; 2005 Sep; 67(5):1031-47. PubMed ID: 15998494
    [TBL] [Abstract][Full Text] [Related]  

  • 15. Secondary structure prediction of interacting RNA molecules.
    Andronescu M; Zhang ZC; Condon A
    J Mol Biol; 2005 Feb; 345(5):987-1001. PubMed ID: 15644199
    [TBL] [Abstract][Full Text] [Related]  

  • 16. FlexStem: improving predictions of RNA secondary structures with pseudoknots by reducing the search space.
    Chen X; He SM; Bu D; Zhang F; Wang Z; Chen R; Gao W
    Bioinformatics; 2008 Sep; 24(18):1994-2001. PubMed ID: 18586700
    [TBL] [Abstract][Full Text] [Related]  

  • 17. The equilibrium partition function and base pair binding probabilities for RNA secondary structure.
    McCaskill JS
    Biopolymers; 1990; 29(6-7):1105-19. PubMed ID: 1695107
    [TBL] [Abstract][Full Text] [Related]  

  • 18. Prediction of RNA secondary structure by free energy minimization.
    Mathews DH; Turner DH
    Curr Opin Struct Biol; 2006 Jun; 16(3):270-8. PubMed ID: 16713706
    [TBL] [Abstract][Full Text] [Related]  

  • 19. The calculation of plant 5S rRNAs secondary structure.
    Joachimiak A; Nalaskowska M; Barciszewska MZ; Mashkova TD; Barciszewski J
    Acta Biochim Pol; 1989; 36(3-4):215-23. PubMed ID: 2485998
    [TBL] [Abstract][Full Text] [Related]  

  • 20. Secondary structure prediction for aligned RNA sequences.
    Hofacker IL; Fekete M; Stadler PF
    J Mol Biol; 2002 Jun; 319(5):1059-66. PubMed ID: 12079347
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 82.