These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.


BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

144 related articles for article (PubMed ID: 10336383)

  • 1. Self-consistent estimation of inter-residue protein contact energies based on an equilibrium mixture approximation of residues.
    Miyazawa S; Jernigan RL
    Proteins; 1999 Jan; 34(1):49-68. PubMed ID: 10336383
    [TBL] [Abstract][Full Text] [Related]  

  • 2. Another look at the conditions for the extraction of protein knowledge-based potentials.
    Betancourt MR
    Proteins; 2009 Jul; 76(1):72-85. PubMed ID: 19089977
    [TBL] [Abstract][Full Text] [Related]  

  • 3. Residue-residue potentials with a favorable contact pair term and an unfavorable high packing density term, for simulation and threading.
    Miyazawa S; Jernigan RL
    J Mol Biol; 1996 Mar; 256(3):623-44. PubMed ID: 8604144
    [TBL] [Abstract][Full Text] [Related]  

  • 4. Environment-dependent residue contact energies for proteins.
    Zhang C; Kim SH
    Proc Natl Acad Sci U S A; 2000 Mar; 97(6):2550-5. PubMed ID: 10706611
    [TBL] [Abstract][Full Text] [Related]  

  • 5. Long- and short-range interactions in native protein structures are consistent/minimally frustrated in sequence space.
    Miyazawa S; Jernigan RL
    Proteins; 2003 Jan; 50(1):35-43. PubMed ID: 12471597
    [TBL] [Abstract][Full Text] [Related]  

  • 6. Properties of contact matrices induced by pairwise interactions in proteins.
    Miyazawa S; Kinjo AR
    Phys Rev E Stat Nonlin Soft Matter Phys; 2008 May; 77(5 Pt 1):051910. PubMed ID: 18643105
    [TBL] [Abstract][Full Text] [Related]  

  • 7. An empirical energy potential with a reference state for protein fold and sequence recognition.
    Miyazawa S; Jernigan RL
    Proteins; 1999 Aug; 36(3):357-69. PubMed ID: 10409829
    [TBL] [Abstract][Full Text] [Related]  

  • 8. Extracting contact energies from protein structures: a study using a simplified model.
    Zhang C
    Proteins; 1998 May; 31(3):299-308. PubMed ID: 9593200
    [TBL] [Abstract][Full Text] [Related]  

  • 9. Potential for assessing quality of protein structure based on contact number prediction.
    Ishida T; Nakamura S; Shimizu K
    Proteins; 2006 Sep; 64(4):940-7. PubMed ID: 16788993
    [TBL] [Abstract][Full Text] [Related]  

  • 10. Identifying sequence-structure pairs undetected by sequence alignments.
    Miyazawa S; Jernigan RL
    Protein Eng; 2000 Jul; 13(7):459-75. PubMed ID: 10906342
    [TBL] [Abstract][Full Text] [Related]  

  • 11. Helix-helix packing and interfacial pairwise interactions of residues in membrane proteins.
    Adamian L; Liang J
    J Mol Biol; 2001 Aug; 311(4):891-907. PubMed ID: 11518538
    [TBL] [Abstract][Full Text] [Related]  

  • 12. Native contact density and nonnative hydrophobic effects in the folding of bacterial immunity proteins.
    Chen T; Chan HS
    PLoS Comput Biol; 2015 May; 11(5):e1004260. PubMed ID: 26016652
    [TBL] [Abstract][Full Text] [Related]  

  • 13. Information and discrimination in pairwise contact potentials.
    Solis AD; Rackovsky S
    Proteins; 2008 May; 71(3):1071-87. PubMed ID: 18004788
    [TBL] [Abstract][Full Text] [Related]  

  • 14. Perceptron learning of pairwise contact energies for proteins incorporating the amino acid environment.
    Heo M; Kim S; Moon EJ; Cheon M; Chung K; Chang I
    Phys Rev E Stat Nonlin Soft Matter Phys; 2005 Jul; 72(1 Pt 1):011906. PubMed ID: 16090000
    [TBL] [Abstract][Full Text] [Related]  

  • 15. TOUCHSTONE II: a new approach to ab initio protein structure prediction.
    Zhang Y; Kolinski A; Skolnick J
    Biophys J; 2003 Aug; 85(2):1145-64. PubMed ID: 12885659
    [TBL] [Abstract][Full Text] [Related]  

  • 16. How well can we predict native contacts in proteins based on decoy structures and their energies?
    Zhu J; Zhu Q; Shi Y; Liu H
    Proteins; 2003 Sep; 52(4):598-608. PubMed ID: 12910459
    [TBL] [Abstract][Full Text] [Related]  

  • 17. Inter-residue interactions in protein folding and stability.
    Gromiha MM; Selvaraj S
    Prog Biophys Mol Biol; 2004 Oct; 86(2):235-77. PubMed ID: 15288760
    [TBL] [Abstract][Full Text] [Related]  

  • 18. Sequence specificity, statistical potentials, and three-dimensional structure prediction with self-correcting distance geometry calculations of beta-sheet formation in proteins.
    Zhu H; Braun W
    Protein Sci; 1999 Feb; 8(2):326-42. PubMed ID: 10048326
    [TBL] [Abstract][Full Text] [Related]  

  • 19. Protein stability for single substitution mutants and the extent of local compactness in the denatured state.
    Miyazawa S; Jernigan RL
    Protein Eng; 1994 Oct; 7(10):1209-20. PubMed ID: 7855136
    [TBL] [Abstract][Full Text] [Related]  

  • 20. Evaluation of short-range interactions as secondary structure energies for protein fold and sequence recognition.
    Miyazawa S; Jernigan RL
    Proteins; 1999 Aug; 36(3):347-56. PubMed ID: 10409828
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 8.