163 related articles for article (PubMed ID: 10404627)
1. Automatic detection of conserved base pairing patterns in RNA virus genomes.
Hofacker IL; Stadler PF
Comput Chem; 1999 Jun; 23(3-4):401-14. PubMed ID: 10404627
[TBL] [Abstract][Full Text] [Related]
2. Automatic detection of conserved RNA structure elements in complete RNA virus genomes.
Hofacker IL; Fekete M; Flamm C; Huynen MA; Rauscher S; Stolorz PE; Stadler PF
Nucleic Acids Res; 1998 Aug; 26(16):3825-36. PubMed ID: 9685502
[TBL] [Abstract][Full Text] [Related]
3. Comparison of SIV and HIV-1 genomic RNA structures reveals impact of sequence evolution on conserved and non-conserved structural motifs.
Pollom E; Dang KK; Potter EL; Gorelick RJ; Burch CL; Weeks KM; Swanstrom R
PLoS Pathog; 2013; 9(4):e1003294. PubMed ID: 23593004
[TBL] [Abstract][Full Text] [Related]
4. A mini-RNA containing the tetraloop, wobble-pair and loop E motifs of the central conserved region of potato spindle tuber viroid is processed into a minicircle.
Schrader O; Baumstark T; Riesner D
Nucleic Acids Res; 2003 Feb; 31(3):988-98. PubMed ID: 12560495
[TBL] [Abstract][Full Text] [Related]
5. Secondary structure of the 3'-noncoding region of flavivirus genomes: comparative analysis of base pairing probabilities.
Rauscher S; Flamm C; Mandl CW; Heinz FX; Stadler PF
RNA; 1997 Jul; 3(7):779-91. PubMed ID: 9214660
[TBL] [Abstract][Full Text] [Related]
6. Complete sequence of Leishmania RNA virus 1-4 and identification of conserved sequences.
Scheffter S; Widmer G; Patterson JL
Virology; 1994 Mar; 199(2):479-83. PubMed ID: 8122377
[TBL] [Abstract][Full Text] [Related]
7. Exploring the architecture of viral RNA genomes.
Nicholson BL; White KA
Curr Opin Virol; 2015 Jun; 12():66-74. PubMed ID: 25884487
[TBL] [Abstract][Full Text] [Related]
8. Conserved motifs in a tombusvirus polymerase modulate genome replication, subgenomic transcription, and amplification of defective interfering RNAs.
Gunawardene CD; Jaluba K; White KA
J Virol; 2015 Mar; 89(6):3236-46. PubMed ID: 25568204
[TBL] [Abstract][Full Text] [Related]
9. Thermodynamic prediction of conserved secondary structure: application to the RRE element of HIV, the tRNA-like element of CMV and the mRNA of prion protein.
Lück R; Steger G; Riesner D
J Mol Biol; 1996 May; 258(5):813-26. PubMed ID: 8637012
[TBL] [Abstract][Full Text] [Related]
10. Conserved microsatellites may contribute to stem-loop structures in 5', 3' terminals of Ebolavirus genomes.
Li D; Zhang H; Peng S; Pan S; Tan Z
Biochem Biophys Res Commun; 2019 Jun; 514(3):726-733. PubMed ID: 31078274
[TBL] [Abstract][Full Text] [Related]
11. Conserved RNA structures in the intergenic regions of ambisense viruses.
Kiening M; Weber F; Frishman D
Sci Rep; 2017 Nov; 7(1):16625. PubMed ID: 29192224
[TBL] [Abstract][Full Text] [Related]
12. Prediction of RNA base pairing probabilities on massively parallel computers.
Fekete M; Hofacker IL; Stadler PF
J Comput Biol; 2000; 7(1-2):171-82. PubMed ID: 10890394
[TBL] [Abstract][Full Text] [Related]
13. Physical and Functional Analysis of Viral RNA Genomes by SHAPE.
Boerneke MA; Ehrhardt JE; Weeks KM
Annu Rev Virol; 2019 Sep; 6(1):93-117. PubMed ID: 31337286
[TBL] [Abstract][Full Text] [Related]
14. RNA genome conservation and secondary structure in SARS-CoV-2 and SARS-related viruses: a first look.
Rangan R; Zheludev IN; Hagey RJ; Pham EA; Wayment-Steele HK; Glenn JS; Das R
RNA; 2020 Aug; 26(8):937-959. PubMed ID: 32398273
[TBL] [Abstract][Full Text] [Related]
15. Modeling Three-Dimensional Structural Motifs of Viral IRES.
Lozano G; Fernandez N; Martinez-Salas E
J Mol Biol; 2016 Feb; 428(5 Pt A):767-776. PubMed ID: 26778619
[TBL] [Abstract][Full Text] [Related]
16. Base pairing probabilities in a complete HIV-1 RNA.
Huynen MA; Perelson A; Vieira WA; Stadler PF
J Comput Biol; 1996; 3(2):253-74. PubMed ID: 8811486
[TBL] [Abstract][Full Text] [Related]
17. Secondary structure of the central region of bacteriophage MS2 RNA. Conservation and biological significance.
Skripkin EA; Adhin MR; de Smit MH; van Duin J
J Mol Biol; 1990 Jan; 211(2):447-63. PubMed ID: 2407856
[TBL] [Abstract][Full Text] [Related]
18. Mapping of conserved RNA secondary structures predicts thousands of functional noncoding RNAs in the human genome.
Washietl S; Hofacker IL; Lukasser M; Hüttenhofer A; Stadler PF
Nat Biotechnol; 2005 Nov; 23(11):1383-90. PubMed ID: 16273071
[TBL] [Abstract][Full Text] [Related]
19. Comparisons of the genomic cis-elements and coding regions in RNA beta components of the hordeiviruses barley stripe mosaic virus, lychnis ringspot virus, and poa semilatent virus.
Solovyev AG; Savenkov EI; Agranovsky AA; Morozov SY
Virology; 1996 May; 219(1):9-18. PubMed ID: 8623558
[TBL] [Abstract][Full Text] [Related]
20. A method for predicting common structures of homologous RNAs.
Le SY; Zhang K; Maizel JV
Comput Biomed Res; 1995 Feb; 28(1):53-66. PubMed ID: 7542191
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]
