360 related articles for article (PubMed ID: 10547299)
1. Benchmarking PSI-BLAST in genome annotation.
Müller A; MacCallum RM; Sternberg MJ
J Mol Biol; 1999 Nov; 293(5):1257-71. PubMed ID: 10547299
[TBL] [Abstract][Full Text] [Related]
2. Enhanced genome annotation using structural profiles in the program 3D-PSSM.
Kelley LA; MacCallum RM; Sternberg MJ
J Mol Biol; 2000 Jun; 299(2):499-520. PubMed ID: 10860755
[TBL] [Abstract][Full Text] [Related]
3. [Analysis, identification and correction of some errors of model refseqs appeared in NCBI Human Gene Database by in silico cloning and experimental verification of novel human genes].
Zhang DL; Ji L; Li YD
Yi Chuan Xue Bao; 2004 May; 31(5):431-43. PubMed ID: 15478601
[TBL] [Abstract][Full Text] [Related]
4. Fast model-based protein homology detection without alignment.
Hochreiter S; Heusel M; Obermayer K
Bioinformatics; 2007 Jul; 23(14):1728-36. PubMed ID: 17488755
[TBL] [Abstract][Full Text] [Related]
5. Evaluation of PSI-BLAST alignment accuracy in comparison to structural alignments.
Friedberg I; Kaplan T; Margalit H
Protein Sci; 2000 Nov; 9(11):2278-84. PubMed ID: 11152139
[TBL] [Abstract][Full Text] [Related]
6. Efficient recognition of protein fold at low sequence identity by conservative application of Psi-BLAST: validation.
Stevens FJ
J Mol Recognit; 2005; 18(2):139-49. PubMed ID: 15558595
[TBL] [Abstract][Full Text] [Related]
7. Pairwise sequence alignment below the twilight zone.
Blake JD; Cohen FE
J Mol Biol; 2001 Mar; 307(2):721-35. PubMed ID: 11254392
[TBL] [Abstract][Full Text] [Related]
8. Exploring the extremes of sequence/structure space with ensemble fold recognition in the program Phyre.
Bennett-Lovsey RM; Herbert AD; Sternberg MJ; Kelley LA
Proteins; 2008 Feb; 70(3):611-25. PubMed ID: 17876813
[TBL] [Abstract][Full Text] [Related]
9. Assessing annotation transfer for genomics: quantifying the relations between protein sequence, structure and function through traditional and probabilistic scores.
Wilson CA; Kreychman J; Gerstein M
J Mol Biol; 2000 Mar; 297(1):233-49. PubMed ID: 10704319
[TBL] [Abstract][Full Text] [Related]
10. FROST: a filter-based fold recognition method.
Marin A; Pothier J; Zimmermann K; Gibrat JF
Proteins; 2002 Dec; 49(4):493-509. PubMed ID: 12402359
[TBL] [Abstract][Full Text] [Related]
11. Homology between O-linked GlcNAc transferases and proteins of the glycogen phosphorylase superfamily.
Wrabl JO; Grishin NV
J Mol Biol; 2001 Nov; 314(3):365-74. PubMed ID: 11846551
[TBL] [Abstract][Full Text] [Related]
12. MIPS bacterial genomes functional annotation benchmark dataset.
Tetko IV; Brauner B; Dunger-Kaltenbach I; Frishman G; Montrone C; Fobo G; Ruepp A; Antonov AV; Surmeli D; Mewes HW
Bioinformatics; 2005 May; 21(10):2520-1. PubMed ID: 15769832
[TBL] [Abstract][Full Text] [Related]
13. Efficient recognition of protein fold at low sequence identity by conservative application of Psi-BLAST: application.
Stevens FJ; Kuemmel C; Babnigg G; Collart FR
J Mol Recognit; 2005; 18(2):150-7. PubMed ID: 15593246
[TBL] [Abstract][Full Text] [Related]
14. Tracembler--software for in-silico chromosome walking in unassembled genomes.
Dong Q; Wilkerson MD; Brendel V
BMC Bioinformatics; 2007 May; 8():151. PubMed ID: 17490482
[TBL] [Abstract][Full Text] [Related]
15. BAliBASE 3.0: latest developments of the multiple sequence alignment benchmark.
Thompson JD; Koehl P; Ripp R; Poch O
Proteins; 2005 Oct; 61(1):127-36. PubMed ID: 16044462
[TBL] [Abstract][Full Text] [Related]
16. NdPASA: a novel pairwise protein sequence alignment algorithm that incorporates neighbor-dependent amino acid propensities.
Wang J; Feng JA
Proteins; 2005 Feb; 58(3):628-37. PubMed ID: 15616964
[TBL] [Abstract][Full Text] [Related]
17. Methods of remote homology detection can be combined to increase coverage by 10% in the midnight zone.
Reid AJ; Yeats C; Orengo CA
Bioinformatics; 2007 Sep; 23(18):2353-60. PubMed ID: 17709341
[TBL] [Abstract][Full Text] [Related]
18. Sources of systematic error in functional annotation of genomes: domain rearrangement, non-orthologous gene displacement and operon disruption.
Galperin MY; Koonin EV
In Silico Biol; 1998; 1(1):55-67. PubMed ID: 11471243
[TBL] [Abstract][Full Text] [Related]
19. Evaluation of algorithms used for cross-species proteome characterisation.
Cordwell SJ; Humphery-Smith I
Electrophoresis; 1997 Aug; 18(8):1410-7. PubMed ID: 9298655
[TBL] [Abstract][Full Text] [Related]
20. Assignment of homology to genome sequences using a library of hidden Markov models that represent all proteins of known structure.
Gough J; Karplus K; Hughey R; Chothia C
J Mol Biol; 2001 Nov; 313(4):903-19. PubMed ID: 11697912
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]
