165 related articles for article (PubMed ID: 10623503)
1. Investigating the binding specificity of U1A-RNA by computational mutagenesis.
Reyes CM; Kollman PA
J Mol Biol; 2000 Jan; 295(1):1-6. PubMed ID: 10623503
[TBL] [Abstract][Full Text] [Related]
2. Crystal structure at 1.92 A resolution of the RNA-binding domain of the U1A spliceosomal protein complexed with an RNA hairpin.
Oubridge C; Ito N; Evans PR; Teo CH; Nagai K
Nature; 1994 Dec; 372(6505):432-8. PubMed ID: 7984237
[TBL] [Abstract][Full Text] [Related]
3. Structure and thermodynamics of RNA-protein binding: using molecular dynamics and free energy analyses to calculate the free energies of binding and conformational change.
Reyes CM; Kollman PA
J Mol Biol; 2000 Apr; 297(5):1145-58. PubMed ID: 10764579
[TBL] [Abstract][Full Text] [Related]
4. Molecular dynamics simulation studies of induced fit and conformational capture in U1A-RNA binding: do molecular substates code for specificity?
Pitici F; Beveridge DL; Baranger AM
Biopolymers; 2002 Dec; 65(6):424-35. PubMed ID: 12434430
[TBL] [Abstract][Full Text] [Related]
5. Coevolution of Drosophila snf protein and its snRNA targets.
Williams SG; Hall KB
Biochemistry; 2010 Jun; 49(22):4571-82. PubMed ID: 20455544
[TBL] [Abstract][Full Text] [Related]
6. Simulations of the dynamics at an RNA-protein interface.
Hermann T; Westhof E
Nat Struct Biol; 1999 Jun; 6(6):540-4. PubMed ID: 10360356
[TBL] [Abstract][Full Text] [Related]
7. Prediction of salt and mutational effects on the association rate of U1A protein and U1 small nuclear RNA stem/loop II.
Qin S; Zhou HX
J Phys Chem B; 2008 May; 112(19):5955-60. PubMed ID: 18154282
[TBL] [Abstract][Full Text] [Related]
8. Anti-U1A monoclonal antibodies recognize unique epitope targets of U1A which are involved in the binding of U1 RNA.
Lutz CS; McClain MT; Harley JB; James JA
J Mol Recognit; 2002; 15(3):163-70. PubMed ID: 12203842
[TBL] [Abstract][Full Text] [Related]
9. Binding of U1A protein changes RNA dynamics as observed by 13C NMR relaxation studies.
Shajani Z; Drobny G; Varani G
Biochemistry; 2007 May; 46(20):5875-83. PubMed ID: 17469848
[TBL] [Abstract][Full Text] [Related]
10. Solution structure of the N-terminal RNP domain of U1A protein: the role of C-terminal residues in structure stability and RNA binding.
Avis JM; Allain FH; Howe PW; Varani G; Nagai K; Neuhaus D
J Mol Biol; 1996 Mar; 257(2):398-411. PubMed ID: 8609632
[TBL] [Abstract][Full Text] [Related]
11. Changes in side-chain and backbone dynamics identify determinants of specificity in RNA recognition by human U1A protein.
Mittermaier A; Varani L; Muhandiram DR; Kay LE; Varani G
J Mol Biol; 1999 Dec; 294(4):967-79. PubMed ID: 10588900
[TBL] [Abstract][Full Text] [Related]
12. Structural basis of the RNA-binding specificity of human U1A protein.
Allain FH; Howe PW; Neuhaus D; Varani G
EMBO J; 1997 Sep; 16(18):5764-72. PubMed ID: 9312034
[TBL] [Abstract][Full Text] [Related]
13. The NMR structure of the 38 kDa U1A protein - PIE RNA complex reveals the basis of cooperativity in regulation of polyadenylation by human U1A protein.
Varani L; Gunderson SI; Mattaj IW; Kay LE; Neuhaus D; Varani G
Nat Struct Biol; 2000 Apr; 7(4):329-35. PubMed ID: 10742179
[TBL] [Abstract][Full Text] [Related]
14. 13C NMR relaxation studies of RNA base and ribose nuclei reveal a complex pattern of motions in the RNA binding site for human U1A protein.
Shajani Z; Varani G
J Mol Biol; 2005 Jun; 349(4):699-715. PubMed ID: 15890361
[TBL] [Abstract][Full Text] [Related]
15. Crosslinking of an iodo-uridine-RNA hairpin to a single site on the human U1A N-terminal RNA binding domain.
Stump WT; Hall KB
RNA; 1995 Mar; 1(1):55-63. PubMed ID: 7489489
[TBL] [Abstract][Full Text] [Related]
16. Two functionally distinct steps mediate high affinity binding of U1A protein to U1 hairpin II RNA.
Katsamba PS; Myszka DG; Laird-Offringa IA
J Biol Chem; 2001 Jun; 276(24):21476-81. PubMed ID: 11297556
[TBL] [Abstract][Full Text] [Related]
17. Molecular dynamics simulation of the human U2B" protein complex with U2 snRNA hairpin IV in aqueous solution.
Guo JX; Gmeiner WH
Biophys J; 2001 Aug; 81(2):630-42. PubMed ID: 11463612
[TBL] [Abstract][Full Text] [Related]
18. High-resolution structural validation of the computational redesign of human U1A protein.
Dobson N; Dantas G; Baker D; Varani G
Structure; 2006 May; 14(5):847-56. PubMed ID: 16698546
[TBL] [Abstract][Full Text] [Related]
19. Kinetic analysis of the role of the tyrosine 13, phenylalanine 56 and glutamine 54 network in the U1A/U1 hairpin II interaction.
Law MJ; Chambers EJ; Katsamba PS; Haworth IS; Laird-Offringa IA
Nucleic Acids Res; 2005; 33(9):2917-28. PubMed ID: 15914668
[TBL] [Abstract][Full Text] [Related]
20. Molecular dynamics simulations of the complex between human U1A protein and hairpin II of U1 small nuclear RNA and of free RNA in solution.
Tang Y; Nilsson L
Biophys J; 1999 Sep; 77(3):1284-305. PubMed ID: 10465742
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]