These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.


BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

1354 related articles for article (PubMed ID: 10742046)

  • 1. Selection of conserved blocks from multiple alignments for their use in phylogenetic analysis.
    Castresana J
    Mol Biol Evol; 2000 Apr; 17(4):540-52. PubMed ID: 10742046
    [TBL] [Abstract][Full Text] [Related]  

  • 2. Improvement of phylogenies after removing divergent and ambiguously aligned blocks from protein sequence alignments.
    Talavera G; Castresana J
    Syst Biol; 2007 Aug; 56(4):564-77. PubMed ID: 17654362
    [TBL] [Abstract][Full Text] [Related]  

  • 3. SATe-II: very fast and accurate simultaneous estimation of multiple sequence alignments and phylogenetic trees.
    Liu K; Warnow TJ; Holder MT; Nelesen SM; Yu J; Stamatakis AP; Linder CR
    Syst Biol; 2012 Jan; 61(1):90-106. PubMed ID: 22139466
    [TBL] [Abstract][Full Text] [Related]  

  • 4. A method of alignment masking for refining the phylogenetic signal of multiple sequence alignments.
    Rajan V
    Mol Biol Evol; 2013 Mar; 30(3):689-712. PubMed ID: 23193120
    [TBL] [Abstract][Full Text] [Related]  

  • 5. Phylogenetic inference from conserved sites alignments.
    Grundy WN; Naylor GJ
    J Exp Zool; 1999 Aug; 285(2):128-39. PubMed ID: 10440724
    [TBL] [Abstract][Full Text] [Related]  

  • 6. AL2CO: calculation of positional conservation in a protein sequence alignment.
    Pei J; Grishin NV
    Bioinformatics; 2001 Aug; 17(8):700-12. PubMed ID: 11524371
    [TBL] [Abstract][Full Text] [Related]  

  • 7. BMGE (Block Mapping and Gathering with Entropy): a new software for selection of phylogenetic informative regions from multiple sequence alignments.
    Criscuolo A; Gribaldo S
    BMC Evol Biol; 2010 Jul; 10():210. PubMed ID: 20626897
    [TBL] [Abstract][Full Text] [Related]  

  • 8. The archaea monophyly issue: A phylogeny of translational elongation factor G(2) sequences inferred from an optimized selection of alignment positions.
    Cammarano P; Creti R; Sanangelantoni AM; Palm P
    J Mol Evol; 1999 Oct; 49(4):524-37. PubMed ID: 10486009
    [TBL] [Abstract][Full Text] [Related]  

  • 9. Alignment of phylogenetically unambiguous indels in Shewanella.
    McCrow JP
    J Comput Biol; 2009 Nov; 16(11):1517-28. PubMed ID: 19958081
    [TBL] [Abstract][Full Text] [Related]  

  • 10. PhyPA: Phylogenetic method with pairwise sequence alignment outperforms likelihood methods in phylogenetics involving highly diverged sequences.
    Xia X
    Mol Phylogenet Evol; 2016 Sep; 102():331-43. PubMed ID: 27377322
    [TBL] [Abstract][Full Text] [Related]  

  • 11. SeqTools: visual tools for manual analysis of sequence alignments.
    Barson G; Griffiths E
    BMC Res Notes; 2016 Jan; 9():39. PubMed ID: 26801397
    [TBL] [Abstract][Full Text] [Related]  

  • 12. Using CLUSTAL for multiple sequence alignments.
    Higgins DG; Thompson JD; Gibson TJ
    Methods Enzymol; 1996; 266():383-402. PubMed ID: 8743695
    [TBL] [Abstract][Full Text] [Related]  

  • 13. Insertions and deletions as phylogenetic signal in an alignment-free context.
    Birth N; Dencker T; Morgenstern B
    PLoS Comput Biol; 2022 Aug; 18(8):e1010303. PubMed ID: 35939516
    [TBL] [Abstract][Full Text] [Related]  

  • 14. Mulan: multiple-sequence local alignment and visualization for studying function and evolution.
    Ovcharenko I; Loots GG; Giardine BM; Hou M; Ma J; Hardison RC; Stubbs L; Miller W
    Genome Res; 2005 Jan; 15(1):184-94. PubMed ID: 15590941
    [TBL] [Abstract][Full Text] [Related]  

  • 15. Rapid and accurate large-scale coestimation of sequence alignments and phylogenetic trees.
    Liu K; Raghavan S; Nelesen S; Linder CR; Warnow T
    Science; 2009 Jun; 324(5934):1561-4. PubMed ID: 19541996
    [TBL] [Abstract][Full Text] [Related]  

  • 16. Genome trees constructed using five different approaches suggest new major bacterial clades.
    Wolf YI; Rogozin IB; Grishin NV; Tatusov RL; Koonin EV
    BMC Evol Biol; 2001 Oct; 1():8. PubMed ID: 11734060
    [TBL] [Abstract][Full Text] [Related]  

  • 17. Elision: a method for accommodating multiple molecular sequence alignments with alignment-ambiguous sites.
    Wheeler WC; Gatesy J; DeSalle R
    Mol Phylogenet Evol; 1995 Mar; 4(1):1-9. PubMed ID: 7620631
    [TBL] [Abstract][Full Text] [Related]  

  • 18. MISFITS: evaluating the goodness of fit between a phylogenetic model and an alignment.
    Nguyen MA; Klaere S; von Haeseler A
    Mol Biol Evol; 2011 Jan; 28(1):143-52. PubMed ID: 20643866
    [TBL] [Abstract][Full Text] [Related]  

  • 19. Bayesian coestimation of phylogeny and sequence alignment.
    Lunter G; Miklós I; Drummond A; Jensen JL; Hein J
    BMC Bioinformatics; 2005 Apr; 6():83. PubMed ID: 15804354
    [TBL] [Abstract][Full Text] [Related]  

  • 20. An integrated approach to the analysis and modeling of protein sequences and structures. III. A comparative study of sequence conservation in protein structural families using multiple structural alignments.
    Yang AS; Honig B
    J Mol Biol; 2000 Aug; 301(3):691-711. PubMed ID: 10966778
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 68.