152 related articles for article (PubMed ID: 10801857)
1. Is a closing "GA pair" a rule for stable loop-loop RNA complexes?
Ducongé F; Di Primo C; Toulme JJ
J Biol Chem; 2000 Jul; 275(28):21287-94. PubMed ID: 10801857
[TBL] [Abstract][Full Text] [Related]
2. Molecular dynamics reveals the stabilizing role of loop closing residues in kissing interactions: comparison between TAR-TAR* and TAR-aptamer.
Beaurain F; Di Primo C; Toulmé JJ; Laguerre M
Nucleic Acids Res; 2003 Jul; 31(14):4275-84. PubMed ID: 12853646
[TBL] [Abstract][Full Text] [Related]
3. Liquid-crystal NMR structure of HIV TAR RNA bound to its SELEX RNA aptamer reveals the origins of the high stability of the complex.
Van Melckebeke H; Devany M; Di Primo C; Beaurain F; Toulmé JJ; Bryce DL; Boisbouvier J
Proc Natl Acad Sci U S A; 2008 Jul; 105(27):9210-5. PubMed ID: 18607001
[TBL] [Abstract][Full Text] [Related]
4. In vitro selection identifies key determinants for loop-loop interactions: RNA aptamers selective for the TAR RNA element of HIV-1.
Ducongé F; Toulmé JJ
RNA; 1999 Dec; 5(12):1605-14. PubMed ID: 10606271
[TBL] [Abstract][Full Text] [Related]
5. NMR structure of a kissing complex formed between the TAR RNA element of HIV-1 and a LNA-modified aptamer.
Lebars I; Richard T; Di Primo C; Toulmé JJ
Nucleic Acids Res; 2007; 35(18):6103-14. PubMed ID: 17768146
[TBL] [Abstract][Full Text] [Related]
6. 2'-O-methyl-RNA hairpins generate loop-loop complexes and selectively inhibit HIV-1 Tat-mediated transcription.
Darfeuille F; Arzumanov A; Gait MJ; Di Primo C; Toulmé JJ
Biochemistry; 2002 Oct; 41(40):12186-92. PubMed ID: 12356320
[TBL] [Abstract][Full Text] [Related]
7. Bimodal loop-loop interactions increase the affinity of RNA aptamers for HIV-1 RNA structures.
Boucard D; Toulmé JJ; Di Primo C
Biochemistry; 2006 Feb; 45(5):1518-24. PubMed ID: 16445294
[TBL] [Abstract][Full Text] [Related]
8. Exploring TAR-RNA aptamer loop-loop interaction by X-ray crystallography, UV spectroscopy and surface plasmon resonance.
Lebars I; Legrand P; Aimé A; Pinaud N; Fribourg S; Di Primo C
Nucleic Acids Res; 2008 Dec; 36(22):7146-56. PubMed ID: 18996893
[TBL] [Abstract][Full Text] [Related]
9. LNA/DNA chimeric oligomers mimic RNA aptamers targeted to the TAR RNA element of HIV-1.
Darfeuille F; Hansen JB; Orum H; Di Primo C; Toulmé JJ
Nucleic Acids Res; 2004; 32(10):3101-7. PubMed ID: 15181175
[TBL] [Abstract][Full Text] [Related]
10. Loop-loop interaction of HIV-1 TAR RNA with N3'-->P5' deoxyphosphoramidate aptamers inhibits in vitro Tat-mediated transcription.
Darfeuille F; Arzumanov A; Gryaznov S; Gait MJ; Di Primo C; Toulmé JJ
Proc Natl Acad Sci U S A; 2002 Jul; 99(15):9709-14. PubMed ID: 12105271
[TBL] [Abstract][Full Text] [Related]
11. Sequence dependence of the stability of RNA hairpin molecules with six nucleotide loops.
Vecenie CJ; Morrow CV; Zyra A; Serra MJ
Biochemistry; 2006 Feb; 45(5):1400-7. PubMed ID: 16445282
[TBL] [Abstract][Full Text] [Related]
12. LNA derivatives of a kissing aptamer targeted to the trans-activating responsive RNA element of HIV-1.
Lebars I; Richard T; Di Primo C; Toulmé JJ
Blood Cells Mol Dis; 2007; 38(3):204-9. PubMed ID: 17300966
[TBL] [Abstract][Full Text] [Related]
13. In vitro selection of RNA aptamers derived from a genomic human library against the TAR RNA element of HIV-1.
Watrin M; Von Pelchrzim F; Dausse E; Schroeder R; Toulmé JJ
Biochemistry; 2009 Jul; 48(26):6278-84. PubMed ID: 19496624
[TBL] [Abstract][Full Text] [Related]
14. Hexitol nucleic acid-containing aptamers are efficient ligands of HIV-1 TAR RNA.
Kolb G; Reigadas S; Boiziau C; van Aerschot A; Arzumanov A; Gait MJ; Herdewijn P; Toulmé JJ
Biochemistry; 2005 Mar; 44(8):2926-33. PubMed ID: 15723535
[TBL] [Abstract][Full Text] [Related]
15. Characterization of a "kissing" hairpin complex derived from the human immunodeficiency virus genome.
Chang KY; Tinoco I
Proc Natl Acad Sci U S A; 1994 Aug; 91(18):8705-9. PubMed ID: 8078946
[TBL] [Abstract][Full Text] [Related]
16. Stability of RNA hairpins closed by wobble base pairs.
Giese MR; Betschart K; Dale T; Riley CK; Rowan C; Sprouse KJ; Serra MJ
Biochemistry; 1998 Jan; 37(4):1094-100. PubMed ID: 9454601
[TBL] [Abstract][Full Text] [Related]
17. The apical loop of the HIV-1 TAR RNA hairpin is stabilized by a cross-loop base pair.
Kulinski T; Olejniczak M; Huthoff H; Bielecki L; Pachulska-Wieczorek K; Das AT; Berkhout B; Adamiak RW
J Biol Chem; 2003 Oct; 278(40):38892-901. PubMed ID: 12882959
[TBL] [Abstract][Full Text] [Related]
18. The stability and structure of tandem GA mismatches in RNA depend on closing base pairs.
Walter AE; Wu M; Turner DH
Biochemistry; 1994 Sep; 33(37):11349-54. PubMed ID: 7537087
[TBL] [Abstract][Full Text] [Related]
19. Closing loop base pairs in RNA loop-loop complexes: structural behavior, interaction energy and solvation analysis through molecular dynamics simulations.
Golebiowski J; Antonczak S; Fernandez-Carmona J; Condom R; Cabrol-Bass D
J Mol Model; 2004 Dec; 10(5-6):408-17. PubMed ID: 15597210
[TBL] [Abstract][Full Text] [Related]
20. Surface plasmon resonance kinetic studies of the HIV TAR RNA kissing hairpin complex and its stabilization by 2-thiouridine modification.
Nair TM; Myszka DG; Davis DR
Nucleic Acids Res; 2000 May; 28(9):1935-40. PubMed ID: 10756194
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]