These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.


BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

111 related articles for article (PubMed ID: 10816141)

  • 1. Using the CATH domain database to assign structures and functions to the genome sequences.
    Pearl F; Todd AE; Bray JE; Martin AC; Salamov AA; Suwa M; Swindells MB; Thornton JM; Orengo CA
    Biochem Soc Trans; 2000 Feb; 28(2):269-75. PubMed ID: 10816141
    [TBL] [Abstract][Full Text] [Related]  

  • 2. Classifying a protein in the CATH database of domain structures.
    Orengo CA; Martin AM; Hutchinson G; Jones S; Jones DT; Michie AD; Swindells MB; Thornton JM
    Acta Crystallogr D Biol Crystallogr; 1998 Nov; 54(Pt 6 Pt 1):1155-67. PubMed ID: 10089492
    [TBL] [Abstract][Full Text] [Related]  

  • 3. The CATH extended protein-family database: providing structural annotations for genome sequences.
    Pearl FM; Lee D; Bray JE; Buchan DW; Shepherd AJ; Orengo CA
    Protein Sci; 2002 Feb; 11(2):233-44. PubMed ID: 11790833
    [TBL] [Abstract][Full Text] [Related]  

  • 4. A rapid classification protocol for the CATH Domain Database to support structural genomics.
    Pearl FM; Martin N; Bray JE; Buchan DW; Harrison AP; Lee D; Reeves GA; Shepherd AJ; Sillitoe I; Todd AE; Thornton JM; Orengo CA
    Nucleic Acids Res; 2001 Jan; 29(1):223-7. PubMed ID: 11125098
    [TBL] [Abstract][Full Text] [Related]  

  • 5. The CATH Domain Structure Database and related resources Gene3D and DHS provide comprehensive domain family information for genome analysis.
    Pearl F; Todd A; Sillitoe I; Dibley M; Redfern O; Lewis T; Bennett C; Marsden R; Grant A; Lee D; Akpor A; Maibaum M; Harrison A; Dallman T; Reeves G; Diboun I; Addou S; Lise S; Johnston C; Sillero A; Thornton J; Orengo C
    Nucleic Acids Res; 2005 Jan; 33(Database issue):D247-51. PubMed ID: 15608188
    [TBL] [Abstract][Full Text] [Related]  

  • 6. Assigning genomic sequences to CATH.
    Pearl FM; Lee D; Bray JE; Sillitoe I; Todd AE; Harrison AP; Thornton JM; Orengo CA
    Nucleic Acids Res; 2000 Jan; 28(1):277-82. PubMed ID: 10592246
    [TBL] [Abstract][Full Text] [Related]  

  • 7. Structural diversity of domain superfamilies in the CATH database.
    Reeves GA; Dallman TJ; Redfern OC; Akpor A; Orengo CA
    J Mol Biol; 2006 Jul; 360(3):725-41. PubMed ID: 16780872
    [TBL] [Abstract][Full Text] [Related]  

  • 8. SUPFAM--a database of potential protein superfamily relationships derived by comparing sequence-based and structure-based families: implications for structural genomics and function annotation in genomes.
    Pandit SB; Gosar D; Abhiman S; Sujatha S; Dixit SS; Mhatre NS; Sowdhamini R; Srinivasan N
    Nucleic Acids Res; 2002 Jan; 30(1):289-93. PubMed ID: 11752317
    [TBL] [Abstract][Full Text] [Related]  

  • 9. Benchmarking PSI-BLAST in genome annotation.
    Müller A; MacCallum RM; Sternberg MJ
    J Mol Biol; 1999 Nov; 293(5):1257-71. PubMed ID: 10547299
    [TBL] [Abstract][Full Text] [Related]  

  • 10. The CATH Dictionary of Homologous Superfamilies (DHS): a consensus approach for identifying distant structural homologues.
    Bray JE; Todd AE; Pearl FM; Thornton JM; Orengo CA
    Protein Eng; 2000 Mar; 13(3):153-65. PubMed ID: 10775657
    [TBL] [Abstract][Full Text] [Related]  

  • 11. The CATH Database provides insights into protein structure/function relationships.
    Orengo CA; Pearl FM; Bray JE; Todd AE; Martin AC; Lo Conte L; Thornton JM
    Nucleic Acids Res; 1999 Jan; 27(1):275-9. PubMed ID: 9847200
    [TBL] [Abstract][Full Text] [Related]  

  • 12. PASS2: an automated database of protein alignments organised as structural superfamilies.
    Bhaduri A; Pugalenthi G; Sowdhamini R
    BMC Bioinformatics; 2004 Apr; 5():35. PubMed ID: 15059245
    [TBL] [Abstract][Full Text] [Related]  

  • 13. Combining sensitive database searches with multiple intermediates to detect distant homologues.
    Salamov AA; Suwa M; Orengo CA; Swindells MB
    Protein Eng; 1999 Feb; 12(2):95-100. PubMed ID: 10195280
    [TBL] [Abstract][Full Text] [Related]  

  • 14. From fold predictions to function predictions: automation of functional site conservation analysis for functional genome predictions.
    Zhang B; Rychlewski L; Pawłowski K; Fetrow JS; Skolnick J; Godzik A
    Protein Sci; 1999 May; 8(5):1104-15. PubMed ID: 10338021
    [TBL] [Abstract][Full Text] [Related]  

  • 15. Gene3D: structural assignment for whole genes and genomes using the CATH domain structure database.
    Buchan DW; Shepherd AJ; Lee D; Pearl FM; Rison SC; Thornton JM; Orengo CA
    Genome Res; 2002 Mar; 12(3):503-14. PubMed ID: 11875040
    [TBL] [Abstract][Full Text] [Related]  

  • 16. Extending CATH: increasing coverage of the protein structure universe and linking structure with function.
    Cuff AL; Sillitoe I; Lewis T; Clegg AB; Rentzsch R; Furnham N; Pellegrini-Calace M; Jones D; Thornton J; Orengo CA
    Nucleic Acids Res; 2011 Jan; 39(Database issue):D420-6. PubMed ID: 21097779
    [TBL] [Abstract][Full Text] [Related]  

  • 17. Improved detection of remote homologues using cascade PSI-BLAST: influence of neighbouring protein families on sequence coverage.
    Kaushik S; Mutt E; Chellappan A; Sankaran S; Srinivasan N; Sowdhamini R
    PLoS One; 2013; 8(2):e56449. PubMed ID: 23437136
    [TBL] [Abstract][Full Text] [Related]  

  • 18. The CATH domain structure database: new protocols and classification levels give a more comprehensive resource for exploring evolution.
    Greene LH; Lewis TE; Addou S; Cuff A; Dallman T; Dibley M; Redfern O; Pearl F; Nambudiry R; Reid A; Sillitoe I; Yeats C; Thornton JM; Orengo CA
    Nucleic Acids Res; 2007 Jan; 35(Database issue):D291-7. PubMed ID: 17135200
    [TBL] [Abstract][Full Text] [Related]  

  • 19. New functional families (FunFams) in CATH to improve the mapping of conserved functional sites to 3D structures.
    Sillitoe I; Cuff AL; Dessailly BH; Dawson NL; Furnham N; Lee D; Lees JG; Lewis TE; Studer RA; Rentzsch R; Yeats C; Thornton JM; Orengo CA
    Nucleic Acids Res; 2013 Jan; 41(Database issue):D490-8. PubMed ID: 23203873
    [TBL] [Abstract][Full Text] [Related]  

  • 20. Using CATH-Gene3D to Analyze the Sequence, Structure, and Function of Proteins.
    Sillitoe I; Lewis T; Orengo C
    Curr Protoc Bioinformatics; 2015 Jun; 50():1.28.1-1.28.21. PubMed ID: 26087950
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 6.