210 related articles for article (PubMed ID: 10833193)
1. Likelihood analysis of phylogenetic networks using directed graphical models.
Strimmer K; Moulton V
Mol Biol Evol; 2000 Jun; 17(6):875-81. PubMed ID: 10833193
[TBL] [Abstract][Full Text] [Related]
2. Bayesian coestimation of phylogeny and sequence alignment.
Lunter G; Miklós I; Drummond A; Jensen JL; Hein J
BMC Bioinformatics; 2005 Apr; 6():83. PubMed ID: 15804354
[TBL] [Abstract][Full Text] [Related]
3. The devil in the details: interactions between the branch-length prior and likelihood model affect node support and branch lengths in the phylogeny of the Psoraceae.
Ekman S; Blaalid R
Syst Biol; 2011 Jul; 60(4):541-61. PubMed ID: 21436107
[TBL] [Abstract][Full Text] [Related]
4. Detecting recombination in 4-taxa DNA sequence alignments with Bayesian hidden Markov models and Markov chain Monte Carlo.
Husmeier D; McGuire G
Mol Biol Evol; 2003 Mar; 20(3):315-37. PubMed ID: 12644553
[TBL] [Abstract][Full Text] [Related]
5. Modelling heterotachy in phylogenetic inference by reversible-jump Markov chain Monte Carlo.
Pagel M; Meade A
Philos Trans R Soc Lond B Biol Sci; 2008 Dec; 363(1512):3955-64. PubMed ID: 18852097
[TBL] [Abstract][Full Text] [Related]
6. Bayesian inference of phylogenetic networks from bi-allelic genetic markers.
Zhu J; Wen D; Yu Y; Meudt HM; Nakhleh L
PLoS Comput Biol; 2018 Jan; 14(1):e1005932. PubMed ID: 29320496
[TBL] [Abstract][Full Text] [Related]
7. Comparison of models for nucleotide substitution used in maximum-likelihood phylogenetic estimation.
Yang Z; Goldman N; Friday A
Mol Biol Evol; 1994 Mar; 11(2):316-24. PubMed ID: 8170371
[TBL] [Abstract][Full Text] [Related]
8. A Surrogate Function for One-Dimensional Phylogenetic Likelihoods.
Claywell BC; Dinh V; Fourment M; McCoy CO; Matsen Iv FA
Mol Biol Evol; 2018 Jan; 35(1):242-246. PubMed ID: 29029199
[TBL] [Abstract][Full Text] [Related]
9. Full reconstruction of non-stationary strand-symmetric models on rooted phylogenies.
Kaehler BD
J Theor Biol; 2017 May; 420():144-151. PubMed ID: 28286217
[TBL] [Abstract][Full Text] [Related]
10. Quartet-mapping, a generalization of the likelihood-mapping procedure.
Nieselt-Struwe K; von Haeseler A
Mol Biol Evol; 2001 Jul; 18(7):1204-19. PubMed ID: 11420361
[TBL] [Abstract][Full Text] [Related]
11. Empirical and hierarchical Bayesian estimation of ancestral states.
Huelsenbeck JP; Bollback JP
Syst Biol; 2001 Jun; 50(3):351-66. PubMed ID: 12116580
[TBL] [Abstract][Full Text] [Related]
12. Do Branch Lengths Help to Locate a Tree in a Phylogenetic Network?
Gambette P; van Iersel L; Kelk S; Pardi F; Scornavacca C
Bull Math Biol; 2016 Sep; 78(9):1773-1795. PubMed ID: 27659024
[TBL] [Abstract][Full Text] [Related]
13. Phylogenetic analysis using parsimony and likelihood methods.
Yang Z
J Mol Evol; 1996 Feb; 42(2):294-307. PubMed ID: 8919881
[TBL] [Abstract][Full Text] [Related]
14. A simulation approach for change-points on phylogenetic trees.
Persing A; Jasra A; Beskos A; Balding D; De Iorio M
J Comput Biol; 2015 Jan; 22(1):10-24. PubMed ID: 25506749
[TBL] [Abstract][Full Text] [Related]
15. Discriminating between rate heterogeneity and interspecific recombination in DNA sequence alignments with phylogenetic factorial hidden Markov models.
Husmeier D
Bioinformatics; 2005 Sep; 21 Suppl 2():ii166-72. PubMed ID: 16204097
[TBL] [Abstract][Full Text] [Related]
16. Addressing the shortcomings of three recent Bayesian methods for detecting interspecific recombination in DNA sequence alignments.
Husmeier D; Mantzaris AV
Stat Appl Genet Mol Biol; 2008; 7(1):Article 34. PubMed ID: 19049490
[TBL] [Abstract][Full Text] [Related]
17. On the inference of complex phylogenetic networks by Markov Chain Monte-Carlo.
Rabier CE; Berry V; Stoltz M; Santos JD; Wang W; Glaszmann JC; Pardi F; Scornavacca C
PLoS Comput Biol; 2021 Sep; 17(9):e1008380. PubMed ID: 34478440
[TBL] [Abstract][Full Text] [Related]
18. Approximate likelihood calculation on a phylogeny for Bayesian estimation of divergence times.
dos Reis M; Yang Z
Mol Biol Evol; 2011 Jul; 28(7):2161-72. PubMed ID: 21310946
[TBL] [Abstract][Full Text] [Related]
19. Performance of maximum parsimony and likelihood phylogenetics when evolution is heterogeneous.
Kolaczkowski B; Thornton JW
Nature; 2004 Oct; 431(7011):980-4. PubMed ID: 15496922
[TBL] [Abstract][Full Text] [Related]
20. A Bayesian perspective on a non-parsimonious parsimony model.
Huelsenbeck JP; Ané C; Larget B; Ronquist F
Syst Biol; 2008 Jun; 57(3):406-19. PubMed ID: 18570035
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]