BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

305 related articles for article (PubMed ID: 10833195)

  • 1. A fast algorithm for joint reconstruction of ancestral amino acid sequences.
    Pupko T; Pe'er I; Shamir R; Graur D
    Mol Biol Evol; 2000 Jun; 17(6):890-6. PubMed ID: 10833195
    [TBL] [Abstract][Full Text] [Related]  

  • 2. Reconstruction of ancestral genomic sequences using likelihood.
    Elias I; Tuller T
    J Comput Biol; 2007 Mar; 14(2):216-37. PubMed ID: 17456016
    [TBL] [Abstract][Full Text] [Related]  

  • 3. A branch-and-bound algorithm for the inference of ancestral amino-acid sequences when the replacement rate varies among sites: Application to the evolution of five gene families.
    Pupko T; Pe'er I; Hasegawa M; Graur D; Friedman N
    Bioinformatics; 2002 Aug; 18(8):1116-23. PubMed ID: 12176835
    [TBL] [Abstract][Full Text] [Related]  

  • 4. Bayesian coestimation of phylogeny and sequence alignment.
    Lunter G; Miklós I; Drummond A; Jensen JL; Hein J
    BMC Bioinformatics; 2005 Apr; 6():83. PubMed ID: 15804354
    [TBL] [Abstract][Full Text] [Related]  

  • 5. A practical algorithm for estimation of the maximum likelihood ancestral reconstruction error.
    Hickey G; Blanchette M
    Pac Symp Biocomput; 2010; ():31-42. PubMed ID: 19908355
    [TBL] [Abstract][Full Text] [Related]  

  • 6. DPRml: distributed phylogeny reconstruction by maximum likelihood.
    Keane TM; Naughton TJ; Travers SA; McInerney JO; McCormack GP
    Bioinformatics; 2005 Apr; 21(7):969-74. PubMed ID: 15513992
    [TBL] [Abstract][Full Text] [Related]  

  • 7. Reconstructing ancestral genomic sequences by co-evolution: formal definitions, computational issues, and biological examples.
    Tuller T; Birin H; Kupiec M; Ruppin E
    J Comput Biol; 2010 Sep; 17(9):1327-44. PubMed ID: 20874411
    [TBL] [Abstract][Full Text] [Related]  

  • 8. Protein phylogenetic inference using maximum likelihood with a genetic algorithm.
    Matsuda H
    Pac Symp Biocomput; 1996; ():512-23. PubMed ID: 9390255
    [TBL] [Abstract][Full Text] [Related]  

  • 9. Genetic algorithm-based maximum-likelihood analysis for molecular phylogeny.
    Katoh K; Kuma K; Miyata T
    J Mol Evol; 2001; 53(4-5):477-84. PubMed ID: 11675608
    [TBL] [Abstract][Full Text] [Related]  

  • 10. Inferring ancestral sequences in taxon-rich phylogenies.
    Gascuel O; Steel M
    Math Biosci; 2010 Oct; 227(2):125-35. PubMed ID: 20627110
    [TBL] [Abstract][Full Text] [Related]  

  • 11. A short proof that phylogenetic tree reconstruction by maximum likelihood is hard.
    Roch S
    IEEE/ACM Trans Comput Biol Bioinform; 2006; 3(1):92-4. PubMed ID: 17048396
    [TBL] [Abstract][Full Text] [Related]  

  • 12. Evolutionary triplet models of structured RNA.
    Bradley RK; Holmes I
    PLoS Comput Biol; 2009 Aug; 5(8):e1000483. PubMed ID: 19714212
    [TBL] [Abstract][Full Text] [Related]  

  • 13. Non-homogeneous models of sequence evolution in the Bio++ suite of libraries and programs.
    Dutheil J; Boussau B
    BMC Evol Biol; 2008 Sep; 8():255. PubMed ID: 18808672
    [TBL] [Abstract][Full Text] [Related]  

  • 14. NJML: a hybrid algorithm for the neighbor-joining and maximum-likelihood methods.
    Ota S; Li WH
    Mol Biol Evol; 2000 Sep; 17(9):1401-9. PubMed ID: 10958856
    [TBL] [Abstract][Full Text] [Related]  

  • 15. ARPIP: Ancestral Sequence Reconstruction with Insertions and Deletions under the Poisson Indel Process.
    Jowkar G; Pečerska J; Maiolo M; Gil M; Anisimova M
    Syst Biol; 2023 Jun; 72(2):307-318. PubMed ID: 35866991
    [TBL] [Abstract][Full Text] [Related]  

  • 16. Approximate maximum parsimony and ancestral maximum likelihood.
    Alon N; Chor B; Pardi F; Rapoport A
    IEEE/ACM Trans Comput Biol Bioinform; 2010; 7(1):183-7. PubMed ID: 20150680
    [TBL] [Abstract][Full Text] [Related]  

  • 17. AxML: a fast program for sequential and parallel phylogenetic tree calculations based on the maximum likelihood method.
    Stamatakis AP; Ludwig T; Meier H; Wolf MJ
    Proc IEEE Comput Soc Bioinform Conf; 2002; 1():21-8. PubMed ID: 15838120
    [TBL] [Abstract][Full Text] [Related]  

  • 18. Ancestral sequence alignment under optimal conditions.
    Hudek AK; Brown DG
    BMC Bioinformatics; 2005 Nov; 6():273. PubMed ID: 16293191
    [TBL] [Abstract][Full Text] [Related]  

  • 19. Representation in stochastic search for phylogenetic tree reconstruction.
    Weber G; Ohno-Machado L; Shieber S
    J Biomed Inform; 2006 Feb; 39(1):43-50. PubMed ID: 16359929
    [TBL] [Abstract][Full Text] [Related]  

  • 20. Reconstructing phylogeny by quadratically approximated maximum likelihood.
    Woodhams MD; Hendy MD
    Bioinformatics; 2004 Aug; 20 Suppl 1():i348-54. PubMed ID: 15262819
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 16.