185 related articles for article (PubMed ID: 10842731)
1. ProtEST: protein multiple sequence alignments from expressed sequence tags.
Cuff JA; Birney E; Clamp ME; Barton GJ
Bioinformatics; 2000 Feb; 16(2):111-6. PubMed ID: 10842731
[TBL] [Abstract][Full Text] [Related]
2. JESAM: CORBA software components to create and publish EST alignments and clusters.
Parsons JD; Rodriguez-Tomé P
Bioinformatics; 2000 Apr; 16(4):313-25. PubMed ID: 10869029
[TBL] [Abstract][Full Text] [Related]
3. Estimation of P-values for global alignments of protein sequences.
Webber C; Barton GJ
Bioinformatics; 2001 Dec; 17(12):1158-67. PubMed ID: 11751224
[TBL] [Abstract][Full Text] [Related]
4. COFFEE: an objective function for multiple sequence alignments.
Notredame C; Holm L; Higgins DG
Bioinformatics; 1998 Jun; 14(5):407-22. PubMed ID: 9682054
[TBL] [Abstract][Full Text] [Related]
5. JPred: a consensus secondary structure prediction server.
Cuff JA; Clamp ME; Siddiqui AS; Finlay M; Barton GJ
Bioinformatics; 1998; 14(10):892-3. PubMed ID: 9927721
[TBL] [Abstract][Full Text] [Related]
6. OXBench: a benchmark for evaluation of protein multiple sequence alignment accuracy.
Raghava GP; Searle SM; Audley PC; Barber JD; Barton GJ
BMC Bioinformatics; 2003 Oct; 4():47. PubMed ID: 14552658
[TBL] [Abstract][Full Text] [Related]
7. A RAPID algorithm for sequence database comparisons: application to the identification of vector contamination in the EMBL databases.
Miller C; Gurd J; Brass A
Bioinformatics; 1999 Feb; 15(2):111-21. PubMed ID: 10089196
[TBL] [Abstract][Full Text] [Related]
8. galaxieEST: addressing EST identity through automated phylogenetic analysis.
Nilsson RH; Rajashekar B; Larsson KH; Ursing BM
BMC Bioinformatics; 2004 Jul; 5():87. PubMed ID: 15236648
[TBL] [Abstract][Full Text] [Related]
9. Automated protein sequence database classification. I. Integration of compositional similarity search, local similarity search, and multiple sequence alignment.
Gracy J; Argos P
Bioinformatics; 1998; 14(2):164-73. PubMed ID: 9545449
[TBL] [Abstract][Full Text] [Related]
10. The use of structure information to increase alignment accuracy does not aid homologue detection with profile HMMs.
Griffiths-Jones S; Bateman A
Bioinformatics; 2002 Sep; 18(9):1243-9. PubMed ID: 12217916
[TBL] [Abstract][Full Text] [Related]
11. Clustal Omega for making accurate alignments of many protein sequences.
Sievers F; Higgins DG
Protein Sci; 2018 Jan; 27(1):135-145. PubMed ID: 28884485
[TBL] [Abstract][Full Text] [Related]
12. Automated protein sequence database classification. II. Delineation Of domain boundaries from sequence similarities.
Gracy J; Argos P
Bioinformatics; 1998; 14(2):174-87. PubMed ID: 9545450
[TBL] [Abstract][Full Text] [Related]
13. transAlign: using amino acids to facilitate the multiple alignment of protein-coding DNA sequences.
Bininda-Emonds OR
BMC Bioinformatics; 2005 Jun; 6():156. PubMed ID: 15969769
[TBL] [Abstract][Full Text] [Related]
14. Pfam: multiple sequence alignments and HMM-profiles of protein domains.
Sonnhammer EL; Eddy SR; Birney E; Bateman A; Durbin R
Nucleic Acids Res; 1998 Jan; 26(1):320-2. PubMed ID: 9399864
[TBL] [Abstract][Full Text] [Related]
15. OrthoSelect: a protocol for selecting orthologous groups in phylogenomics.
Schreiber F; Pick K; Erpenbeck D; Wörheide G; Morgenstern B
BMC Bioinformatics; 2009 Jul; 10():219. PubMed ID: 19607672
[TBL] [Abstract][Full Text] [Related]
16. Protein secondary structure prediction using local alignments.
Salamov AA; Solovyev VV
J Mol Biol; 1997 Apr; 268(1):31-6. PubMed ID: 9149139
[TBL] [Abstract][Full Text] [Related]
17. Evaluation and improvement of multiple sequence methods for protein secondary structure prediction.
Cuff JA; Barton GJ
Proteins; 1999 Mar; 34(4):508-19. PubMed ID: 10081963
[TBL] [Abstract][Full Text] [Related]
18. Generation of 7137 non-redundant expressed sequence tags from a legume, Lotus japonicus.
Asamizu E; Nakamura Y; Sato S; Tabata S
DNA Res; 2000 Apr; 7(2):127-30. PubMed ID: 10819328
[TBL] [Abstract][Full Text] [Related]
19. Pfam 3.1: 1313 multiple alignments and profile HMMs match the majority of proteins.
Bateman A; Birney E; Durbin R; Eddy SR; Finn RD; Sonnhammer EL
Nucleic Acids Res; 1999 Jan; 27(1):260-2. PubMed ID: 9847196
[TBL] [Abstract][Full Text] [Related]
20. Quantification of secondary structure prediction improvement using multiple alignments.
Levin JM; Pascarella S; Argos P; Garnier J
Protein Eng; 1993 Nov; 6(8):849-54. PubMed ID: 8309932
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]