425 related articles for article (PubMed ID: 10843847)
1. A DNA structural atlas for Escherichia coli.
Pedersen AG; Jensen LJ; Brunak S; Staerfeldt HH; Ussery DW
J Mol Biol; 2000 Jun; 299(4):907-30. PubMed ID: 10843847
[TBL] [Abstract][Full Text] [Related]
2. Curved DNA in promoter sequences.
Gabrielian AE; Landsman D; Bolshoy A
In Silico Biol; 1999-2000; 1(4):183-96. PubMed ID: 11479933
[TBL] [Abstract][Full Text] [Related]
3. The G+C-rich discriminator region of the tyrT promoter antagonises the formation of stable preinitiation complexes.
Pemberton IK; Muskhelishvili G; Travers AA; Buckle M
J Mol Biol; 2000 Jun; 299(4):859-64. PubMed ID: 10843842
[TBL] [Abstract][Full Text] [Related]
4. The effect of the DNA conformation on the rate of NtrC activated transcription of Escherichia coli RNA polymerase.sigma(54) holoenzyme.
Schulz A; Langowski J; Rippe K
J Mol Biol; 2000 Jul; 300(4):709-25. PubMed ID: 10891265
[TBL] [Abstract][Full Text] [Related]
5. Effect of DNA structural flexibility on promoter strength--molecular dynamics studies of E. coli promoter sequences.
Thiyagarajan S; Rajan SS; Gautham N
Biochem Biophys Res Commun; 2006 Mar; 341(2):557-66. PubMed ID: 16427605
[TBL] [Abstract][Full Text] [Related]
6. Genome analysis of Escherichia coli promoter sequences evidences that DNA static curvature plays a more important role in gene transcription than has previously been anticipated.
Olivares-Zavaleta N; Jáuregui R; Merino E
Genomics; 2006 Mar; 87(3):329-37. PubMed ID: 16413165
[TBL] [Abstract][Full Text] [Related]
7. Inferring regulatory elements from a whole genome. An analysis of Helicobacter pylori sigma(80) family of promoter signals.
Vanet A; Marsan L; Labigne A; Sagot MF
J Mol Biol; 2000 Mar; 297(2):335-53. PubMed ID: 10715205
[TBL] [Abstract][Full Text] [Related]
8. The seven E. coli ribosomal RNA operon upstream regulatory regions differ in structure and transcription factor binding efficiencies.
Hillebrand A; Wurm R; Menzel A; Wagner R
Biol Chem; 2005 Jun; 386(6):523-34. PubMed ID: 16006239
[TBL] [Abstract][Full Text] [Related]
9. Signal-theoretical DNA similarity measure revealing unexpected similarities of E. coli promoters.
Deyneko IV; Kel AE; Bloecker H; Kauer G
In Silico Biol; 2005; 5(5-6):547-55. PubMed ID: 16268796
[TBL] [Abstract][Full Text] [Related]
10. Activation of transcription initiation from a stable RNA promoter by a Fis protein-mediated DNA structural transmission mechanism.
Opel ML; Aeling KA; Holmes WM; Johnson RC; Benham CJ; Hatfield GW
Mol Microbiol; 2004 Jul; 53(2):665-74. PubMed ID: 15228542
[TBL] [Abstract][Full Text] [Related]
11. The in silico prediction of promoters in bacterial genomes.
Towsey M; Hogan JM; Mathews S; Timms P
Genome Inform; 2007; 19():178-89. PubMed ID: 18546515
[TBL] [Abstract][Full Text] [Related]
12. The regional rule for bacterial base composition.
Mitchison G
Trends Genet; 2005 Aug; 21(8):440-3. PubMed ID: 15978695
[TBL] [Abstract][Full Text] [Related]
13. Curvature distribution in prokaryotic genomes.
Kozobay-Avraham L; Hosid S; Bolshoy A
In Silico Biol; 2004; 4(3):361-75. PubMed ID: 15724286
[TBL] [Abstract][Full Text] [Related]
14. Mechanism of regulation of transcription initiation by ppGpp. II. Models for positive control based on properties of RNAP mutants and competition for RNAP.
Barker MM; Gaal T; Gourse RL
J Mol Biol; 2001 Jan; 305(4):689-702. PubMed ID: 11162085
[TBL] [Abstract][Full Text] [Related]
15. Relative stability of DNA as a generic criterion for promoter prediction: whole genome annotation of microbial genomes with varying nucleotide base composition.
Rangannan V; Bansal M
Mol Biosyst; 2009 Dec; 5(12):1758-69. PubMed ID: 19593472
[TBL] [Abstract][Full Text] [Related]
16. Molecular dynamics simulations of B '-DNA: sequence effects on A-tract-induced bending and flexibility.
McConnell KJ; Beveridge DL
J Mol Biol; 2001 Nov; 314(1):23-40. PubMed ID: 11724529
[TBL] [Abstract][Full Text] [Related]
17. Domain 1.1 of the sigma(70) subunit of Escherichia coli RNA polymerase modulates the formation of stable polymerase/promoter complexes.
Vuthoori S; Bowers CW; McCracken A; Dombroski AJ; Hinton DM
J Mol Biol; 2001 Jun; 309(3):561-72. PubMed ID: 11397080
[TBL] [Abstract][Full Text] [Related]
18. Bacterial repression loops require enhanced DNA flexibility.
Becker NA; Kahn JD; Maher LJ
J Mol Biol; 2005 Jun; 349(4):716-30. PubMed ID: 15893770
[TBL] [Abstract][Full Text] [Related]
19. Functional studies of potential intrastrand triplex elements in the Escherichia coli genome.
Hoyne PR; Maher LJ
J Mol Biol; 2002 Apr; 318(2):373-86. PubMed ID: 12051844
[TBL] [Abstract][Full Text] [Related]
20. The genome BLASTatlas-a GeneWiz extension for visualization of whole-genome homology.
Hallin PF; Binnewies TT; Ussery DW
Mol Biosyst; 2008 May; 4(5):363-71. PubMed ID: 18414733
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]