135 related articles for article (PubMed ID: 10884359)
1. Accurate formula for P-values of gapped local sequence and profile alignments.
Mott R
J Mol Biol; 2000 Jul; 300(3):649-59. PubMed ID: 10884359
[TBL] [Abstract][Full Text] [Related]
2. STRUCTFAST: protein sequence remote homology detection and alignment using novel dynamic programming and profile-profile scoring.
Debe DA; Danzer JF; Goddard WA; Poleksic A
Proteins; 2006 Sep; 64(4):960-7. PubMed ID: 16786595
[TBL] [Abstract][Full Text] [Related]
3. A Shannon entropy-based filter detects high- quality profile-profile alignments in searches for remote homologues.
Capriotti E; Fariselli P; Rossi I; Casadio R
Proteins; 2004 Feb; 54(2):351-60. PubMed ID: 14696197
[TBL] [Abstract][Full Text] [Related]
4. Convergent Island Statistics: a fast method for determining local alignment score significance.
Poleksic A; Danzer JF; Hambly K; Debe DA
Bioinformatics; 2005 Jun; 21(12):2827-31. PubMed ID: 15817690
[TBL] [Abstract][Full Text] [Related]
5. PROMALS: towards accurate multiple sequence alignments of distantly related proteins.
Pei J; Grishin NV
Bioinformatics; 2007 Apr; 23(7):802-8. PubMed ID: 17267437
[TBL] [Abstract][Full Text] [Related]
6. GASP: Gapped Ancestral Sequence Prediction for proteins.
Edwards RJ; Shields DC
BMC Bioinformatics; 2004 Sep; 5():123. PubMed ID: 15350199
[TBL] [Abstract][Full Text] [Related]
7. Frequency of gaps observed in a structurally aligned protein pair database suggests a simple gap penalty function.
Goonesekere NC; Lee B
Nucleic Acids Res; 2004; 32(9):2838-43. PubMed ID: 15155852
[TBL] [Abstract][Full Text] [Related]
8. An integrated approach to the analysis and modeling of protein sequences and structures. III. A comparative study of sequence conservation in protein structural families using multiple structural alignments.
Yang AS; Honig B
J Mol Biol; 2000 Aug; 301(3):691-711. PubMed ID: 10966778
[TBL] [Abstract][Full Text] [Related]
9. Toward an accurate statistics of gapped alignments.
Kschischo M; Lässig M; Yu YK
Bull Math Biol; 2005 Jan; 67(1):169-91. PubMed ID: 15691544
[TBL] [Abstract][Full Text] [Related]
10. Optimization of a new score function for the generation of accurate alignments.
Qian B; Goldstein RA
Proteins; 2002 Sep; 48(4):605-10. PubMed ID: 12211027
[TBL] [Abstract][Full Text] [Related]
11. Prediction of functional specificity determinants from protein sequences using log-likelihood ratios.
Pei J; Cai W; Kinch LN; Grishin NV
Bioinformatics; 2006 Jan; 22(2):164-71. PubMed ID: 16278237
[TBL] [Abstract][Full Text] [Related]
12. Incremental window-based protein sequence alignment algorithms.
Rangwala H; Karypis G
Bioinformatics; 2007 Jan; 23(2):e17-23. PubMed ID: 17237087
[TBL] [Abstract][Full Text] [Related]
13. Optimizing the size of the sequence profiles to increase the accuracy of protein sequence alignments generated by profile-profile algorithms.
Poleksic A; Fienup M
Bioinformatics; 2008 May; 24(9):1145-53. PubMed ID: 18337259
[TBL] [Abstract][Full Text] [Related]
14. A comparison of scoring functions for protein sequence profile alignment.
Edgar RC; Sjölander K
Bioinformatics; 2004 May; 20(8):1301-8. PubMed ID: 14962936
[TBL] [Abstract][Full Text] [Related]
15. How well does the HoT score reflect sequence alignment accuracy?
Hall BG
Mol Biol Evol; 2008 Aug; 25(8):1576-80. PubMed ID: 18458029
[TBL] [Abstract][Full Text] [Related]
16. FAST: a novel protein structure alignment algorithm.
Zhu J; Weng Z
Proteins; 2005 Feb; 58(3):618-27. PubMed ID: 15609341
[TBL] [Abstract][Full Text] [Related]
17. Estimating and evaluating the statistics of gapped local-alignment scores.
Bailey TL; Gribskov M
J Comput Biol; 2002; 9(3):575-93. PubMed ID: 12162893
[TBL] [Abstract][Full Text] [Related]
18. Approximate statistics of gapped alignments.
Mott R; Tribe R
J Comput Biol; 1999; 6(1):91-112. PubMed ID: 10223667
[TBL] [Abstract][Full Text] [Related]
19. Generalized affine gap costs for protein sequence alignment.
Altschul SF
Proteins; 1998 Jul; 32(1):88-96. PubMed ID: 9672045
[TBL] [Abstract][Full Text] [Related]
20. An information theoretic view of gapped and other alignments.
Schmidt JP
Pac Symp Biocomput; 1998; ():561-72. PubMed ID: 9697212
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]
