These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.


BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

201 related articles for article (PubMed ID: 10899148)

  • 1. From complete genomes to measures of substitution rate variability within and between proteins.
    Grishin NV; Wolf YI; Koonin EV
    Genome Res; 2000 Jul; 10(7):991-1000. PubMed ID: 10899148
    [TBL] [Abstract][Full Text] [Related]  

  • 2. Genome trees and the tree of life.
    Wolf YI; Rogozin IB; Grishin NV; Koonin EV
    Trends Genet; 2002 Sep; 18(9):472-9. PubMed ID: 12175808
    [TBL] [Abstract][Full Text] [Related]  

  • 3. Efficient biased estimation of evolutionary distances when substitution rates vary across sites.
    Guindon S; Gascuel O
    Mol Biol Evol; 2002 Apr; 19(4):534-43. PubMed ID: 11919295
    [TBL] [Abstract][Full Text] [Related]  

  • 4. GeneTRACE-reconstruction of gene content of ancestral species.
    Kunin V; Ouzounis CA
    Bioinformatics; 2003 Jul; 19(11):1412-6. PubMed ID: 12874054
    [TBL] [Abstract][Full Text] [Related]  

  • 5. Prediction of function divergence in protein families using the substitution rate variation parameter alpha.
    Abhiman S; Daub CO; Sonnhammer EL
    Mol Biol Evol; 2006 Jul; 23(7):1406-13. PubMed ID: 16672285
    [TBL] [Abstract][Full Text] [Related]  

  • 6. Overdispersion of the molecular clock: temporal variation of gene-specific substitution rates in Drosophila.
    Bedford T; Hartl DL
    Mol Biol Evol; 2008 Aug; 25(8):1631-8. PubMed ID: 18480070
    [TBL] [Abstract][Full Text] [Related]  

  • 7. Robust sequence alignment using evolutionary rates coupled with an amino acid substitution matrix.
    Ndhlovu A; Hazelhurst S; Durand PM
    BMC Bioinformatics; 2015 Aug; 16():255. PubMed ID: 26269100
    [TBL] [Abstract][Full Text] [Related]  

  • 8. A configuration space of homologous proteins conserving mutual information and allowing a phylogeny inference based on pair-wise Z-score probabilities.
    Bastien O; Ortet P; Roy S; Maréchal E
    BMC Bioinformatics; 2005 Mar; 6():49. PubMed ID: 15757521
    [TBL] [Abstract][Full Text] [Related]  

  • 9. Evolutionary models accounting for layers of selection in protein-coding genes and their impact on the inference of positive selection.
    Rubinstein ND; Doron-Faigenboim A; Mayrose I; Pupko T
    Mol Biol Evol; 2011 Dec; 28(12):3297-308. PubMed ID: 21690564
    [TBL] [Abstract][Full Text] [Related]  

  • 10. Pandit: a database of protein and associated nucleotide domains with inferred trees.
    Whelan S; de Bakker PI; Goldman N
    Bioinformatics; 2003 Aug; 19(12):1556-63. PubMed ID: 12912837
    [TBL] [Abstract][Full Text] [Related]  

  • 11. The estimation of relative site variability among aligned homologous protein sequences.
    Horner DS; Pesole G
    Bioinformatics; 2003 Mar; 19(5):600-6. PubMed ID: 12651718
    [TBL] [Abstract][Full Text] [Related]  

  • 12. Bayesian coestimation of phylogeny and sequence alignment.
    Lunter G; Miklós I; Drummond A; Jensen JL; Hein J
    BMC Bioinformatics; 2005 Apr; 6():83. PubMed ID: 15804354
    [TBL] [Abstract][Full Text] [Related]  

  • 13. Evolutionary distances between nucleotide sequences based on the distribution of substitution rates among sites as estimated by parsimony.
    Tourasse NJ; Gouy M
    Mol Biol Evol; 1997 Mar; 14(3):287-98. PubMed ID: 9066796
    [TBL] [Abstract][Full Text] [Related]  

  • 14. On the quality of tree-based protein classification.
    Lazareva-Ulitsky B; Diemer K; Thomas PD
    Bioinformatics; 2005 May; 21(9):1876-90. PubMed ID: 15647305
    [TBL] [Abstract][Full Text] [Related]  

  • 15. A novel method for estimating ancestral amino acid composition and its application to proteins of the Last Universal Ancestor.
    Brooks DJ; Fresco JR; Singh M
    Bioinformatics; 2004 Sep; 20(14):2251-7. PubMed ID: 15073018
    [TBL] [Abstract][Full Text] [Related]  

  • 16. Euclidian space and grouping of biological objects.
    Grishin VN; Grishin NV
    Bioinformatics; 2002 Nov; 18(11):1523-34. PubMed ID: 12424125
    [TBL] [Abstract][Full Text] [Related]  

  • 17. An alternative model of amino acid replacement.
    Crooks GE; Brenner SE
    Bioinformatics; 2005 Apr; 21(7):975-80. PubMed ID: 15531614
    [TBL] [Abstract][Full Text] [Related]  

  • 18. Ecdysozoan clade rejected by genome-wide analysis of rare amino acid replacements.
    Rogozin IB; Wolf YI; Carmel L; Koonin EV
    Mol Biol Evol; 2007 Apr; 24(4):1080-90. PubMed ID: 17299026
    [TBL] [Abstract][Full Text] [Related]  

  • 19. Genome trees constructed using five different approaches suggest new major bacterial clades.
    Wolf YI; Rogozin IB; Grishin NV; Tatusov RL; Koonin EV
    BMC Evol Biol; 2001 Oct; 1():8. PubMed ID: 11734060
    [TBL] [Abstract][Full Text] [Related]  

  • 20. An improved general amino acid replacement matrix.
    Le SQ; Gascuel O
    Mol Biol Evol; 2008 Jul; 25(7):1307-20. PubMed ID: 18367465
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 11.