BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

223 related articles for article (PubMed ID: 10905826)

  • 1. Influence of non-bonded parameters on the quality of NMR structures: a new force field for NMR structure calculation.
    Linge JP; Nilges M
    J Biomol NMR; 1999 Jan; 13(1):51-9. PubMed ID: 10905826
    [TBL] [Abstract][Full Text] [Related]  

  • 2. Refinement of protein structures in explicit solvent.
    Linge JP; Williams MA; Spronk CA; Bonvin AM; Nilges M
    Proteins; 2003 Feb; 50(3):496-506. PubMed ID: 12557191
    [TBL] [Abstract][Full Text] [Related]  

  • 3. Refinement of NMR structures using implicit solvent and advanced sampling techniques.
    Chen J; Im W; Brooks CL
    J Am Chem Soc; 2004 Dec; 126(49):16038-47. PubMed ID: 15584737
    [TBL] [Abstract][Full Text] [Related]  

  • 4. Improving NMR protein structure quality by Rosetta refinement: a molecular replacement study.
    Ramelot TA; Raman S; Kuzin AP; Xiao R; Ma LC; Acton TB; Hunt JF; Montelione GT; Baker D; Kennedy MA
    Proteins; 2009 Apr; 75(1):147-67. PubMed ID: 18816799
    [TBL] [Abstract][Full Text] [Related]  

  • 5. NMRe: a web server for NMR protein structure refinement with high-quality structure validation scores.
    Ryu H; Lim G; Sung BH; Lee J
    Bioinformatics; 2016 Feb; 32(4):611-3. PubMed ID: 26504145
    [TBL] [Abstract][Full Text] [Related]  

  • 6. Force field dependence of NMR-Based, restrained molecular dynamics DNA structure calculations including an analysis of the influence of residual dipolar coupling restraints.
    McAteer K; Kennedy MA
    J Biomol Struct Dyn; 2003 Feb; 20(4):487-506. PubMed ID: 12529149
    [TBL] [Abstract][Full Text] [Related]  

  • 7. A Grid-enabled web portal for NMR structure refinement with AMBER.
    Bertini I; Case DA; Ferella L; Giachetti A; Rosato A
    Bioinformatics; 2011 Sep; 27(17):2384-90. PubMed ID: 21757462
    [TBL] [Abstract][Full Text] [Related]  

  • 8. Comparison of protein solution structures refined by molecular dynamics simulation in vacuum, with a generalized Born model, and with explicit water.
    Xia B; Tsui V; Case DA; Dyson HJ; Wright PE
    J Biomol NMR; 2002 Apr; 22(4):317-31. PubMed ID: 12018480
    [TBL] [Abstract][Full Text] [Related]  

  • 9. NMR refinement and peptide folding using the GROMACS software.
    Sinelnikova A; Spoel DV
    J Biomol NMR; 2021 May; 75(4-5):143-149. PubMed ID: 33778935
    [TBL] [Abstract][Full Text] [Related]  

  • 10. High quality NMR structures: a new force field with implicit water and membrane solvation for Xplor-NIH.
    Tian Y; Schwieters CD; Opella SJ; Marassi FM
    J Biomol NMR; 2017 Jan; 67(1):35-49. PubMed ID: 28035651
    [TBL] [Abstract][Full Text] [Related]  

  • 11. Maximum entropy approach to the determination of solution conformation of flexible polypeptides by global conformational analysis and NMR spectroscopy--application to DNS1-c-[D-A2,bu2,Trp4,Leu5]enkephalin and DNS1-c-[D-A2bu2,Trp4,D-Leu5]enkephalin.
    Groth M; Malicka J; Czaplewski C; Ołdziej S; Lankiewicz L; Wiczk W; Liwo A
    J Biomol NMR; 1999 Dec; 15(4):315-30. PubMed ID: 10685340
    [TBL] [Abstract][Full Text] [Related]  

  • 12. NMR-based modeling and refinement of protein 3D structures.
    Vranken WF; Vuister GW; Bonvin AM
    Methods Mol Biol; 2015; 1215():351-80. PubMed ID: 25330971
    [TBL] [Abstract][Full Text] [Related]  

  • 13. Improving the quality of protein structures derived by NMR spectroscopy.
    Spronk CA; Linge JP; Hilbers CW; Vuister GW
    J Biomol NMR; 2002 Mar; 22(3):281-9. PubMed ID: 11991356
    [TBL] [Abstract][Full Text] [Related]  

  • 14. High-resolution NMR structure of an RNA model system: the 14-mer cUUCGg tetraloop hairpin RNA.
    Nozinovic S; Fürtig B; Jonker HR; Richter C; Schwalbe H
    Nucleic Acids Res; 2010 Jan; 38(2):683-94. PubMed ID: 19906714
    [TBL] [Abstract][Full Text] [Related]  

  • 15. Improving Geometric Validation Metrics and Ensuring Consistency with Experimental Data through TrioSA: An NMR Refinement Protocol.
    Cho Y; Ryu H; Lim G; Nam S; Lee J
    Int J Mol Sci; 2023 Aug; 24(17):. PubMed ID: 37686144
    [TBL] [Abstract][Full Text] [Related]  

  • 16. Simultaneous single-structure and bundle representation of protein NMR structures in torsion angle space.
    Gottstein D; Kirchner DK; Güntert P
    J Biomol NMR; 2012 Apr; 52(4):351-64. PubMed ID: 22351031
    [TBL] [Abstract][Full Text] [Related]  

  • 17. Torsion-angle molecular dynamics as a new efficient tool for NMR structure calculation.
    Stein EG; Rice LM; Brünger AT
    J Magn Reson; 1997 Jan; 124(1):154-64. PubMed ID: 9424305
    [TBL] [Abstract][Full Text] [Related]  

  • 18. Solution structure of a sweet protein single-chain monellin determined by nuclear magnetic resonance and dynamical simulated annealing calculations.
    Lee SY; Lee JH; Chang HJ; Cho JM; Jung JW; Lee W
    Biochemistry; 1999 Feb; 38(8):2340-6. PubMed ID: 10029527
    [TBL] [Abstract][Full Text] [Related]  

  • 19. Using Complementary NMR Data Sets To Detect Inconsistencies and Model Flaws in the Structure Determination of Human Interleukin-4.
    Smith LJ; van Gunsteren WF; Hansen N
    J Phys Chem B; 2017 Jul; 121(29):7055-7063. PubMed ID: 28640620
    [TBL] [Abstract][Full Text] [Related]  

  • 20. [Optimization of the methods for small peptide solution structure determination by NMR spectroscopy].
    Istrate AN; Mantsyzov AB; Kozin SA; Pol'shakov VI
    Mol Biol (Mosk); 2010; 44(6):1075-85. PubMed ID: 21290829
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 12.