479 related articles for article (PubMed ID: 10908645)
21. On the quality of tree-based protein classification.
Lazareva-Ulitsky B; Diemer K; Thomas PD
Bioinformatics; 2005 May; 21(9):1876-90. PubMed ID: 15647305
[TBL] [Abstract][Full Text] [Related]
22. FastME 2.0: A Comprehensive, Accurate, and Fast Distance-Based Phylogeny Inference Program.
Lefort V; Desper R; Gascuel O
Mol Biol Evol; 2015 Oct; 32(10):2798-800. PubMed ID: 26130081
[TBL] [Abstract][Full Text] [Related]
23. A heuristic approach of maximum likelihood method for inferring phylogenetic tree and an application to the mammalian SOX-3 origin of the testis-determining gene SRY.
Katoh K; Miyata T
FEBS Lett; 1999 Dec; 463(1-2):129-32. PubMed ID: 10601652
[TBL] [Abstract][Full Text] [Related]
24. Consequences of Common Topological Rearrangements for Partition Trees in Phylogenomic Inference.
Chernomor O; Minh BQ; von Haeseler A
J Comput Biol; 2015 Dec; 22(12):1129-42. PubMed ID: 26448206
[TBL] [Abstract][Full Text] [Related]
25. morePhyML: improving the phylogenetic tree space exploration with PhyML 3.
Criscuolo A
Mol Phylogenet Evol; 2011 Dec; 61(3):944-8. PubMed ID: 21925283
[TBL] [Abstract][Full Text] [Related]
26. Consistency of topological moves based on the balanced minimum evolution principle of phylogenetic inference.
Bordewich M; Gascuel O; Huber KT; Moulton V
IEEE/ACM Trans Comput Biol Bioinform; 2009; 6(1):110-7. PubMed ID: 19179704
[TBL] [Abstract][Full Text] [Related]
27. Bayesian coestimation of phylogeny and sequence alignment.
Lunter G; Miklós I; Drummond A; Jensen JL; Hein J
BMC Bioinformatics; 2005 Apr; 6():83. PubMed ID: 15804354
[TBL] [Abstract][Full Text] [Related]
28. SATe-II: very fast and accurate simultaneous estimation of multiple sequence alignments and phylogenetic trees.
Liu K; Warnow TJ; Holder MT; Nelesen SM; Yu J; Stamatakis AP; Linder CR
Syst Biol; 2012 Jan; 61(1):90-106. PubMed ID: 22139466
[TBL] [Abstract][Full Text] [Related]
29. Reconstructing phylogeny by quadratically approximated maximum likelihood.
Woodhams MD; Hendy MD
Bioinformatics; 2004 Aug; 20 Suppl 1():i348-54. PubMed ID: 15262819
[TBL] [Abstract][Full Text] [Related]
30. Phylogenetic analysis using parsimony and likelihood methods.
Yang Z
J Mol Evol; 1996 Feb; 42(2):294-307. PubMed ID: 8919881
[TBL] [Abstract][Full Text] [Related]
31. Efficiencies of the NJp, Maximum Likelihood, and Bayesian Methods of Phylogenetic Construction for Compositional and Noncompositional Genes.
Yoshida R; Nei M
Mol Biol Evol; 2016 Jun; 33(6):1618-24. PubMed ID: 26929244
[TBL] [Abstract][Full Text] [Related]
32. Evaluation of Ancestral Sequence Reconstruction Methods to Infer Nonstationary Patterns of Nucleotide Substitution.
Matsumoto T; Akashi H; Yang Z
Genetics; 2015 Jul; 200(3):873-90. PubMed ID: 25948563
[TBL] [Abstract][Full Text] [Related]
33. Relative efficiencies of the maximum likelihood, maximum parsimony, and neighbor-joining methods for estimating protein phylogeny.
Hasegawa M; Fujiwara M
Mol Phylogenet Evol; 1993 Mar; 2(1):1-5. PubMed ID: 8081543
[TBL] [Abstract][Full Text] [Related]
34. A multi-neighbor-joining approach for phylogenetic tree reconstruction and visualization.
Silva AE; Villanueva WJ; Knidel H; Bonato VC; Reis SF; Von Zuben FJ
Genet Mol Res; 2005 Sep; 4(3):525-34. PubMed ID: 16342037
[TBL] [Abstract][Full Text] [Related]
35. FastTree 2--approximately maximum-likelihood trees for large alignments.
Price MN; Dehal PS; Arkin AP
PLoS One; 2010 Mar; 5(3):e9490. PubMed ID: 20224823
[TBL] [Abstract][Full Text] [Related]
36. Ancestral sequence alignment under optimal conditions.
Hudek AK; Brown DG
BMC Bioinformatics; 2005 Nov; 6():273. PubMed ID: 16293191
[TBL] [Abstract][Full Text] [Related]
37. Upper bounds on maximum likelihood for phylogenetic trees.
Hendy MD; Holland BR
Bioinformatics; 2003 Oct; 19 Suppl 2():ii66-72. PubMed ID: 14534174
[TBL] [Abstract][Full Text] [Related]
38. Inferring Trees.
Whelan S; Morrison DA
Methods Mol Biol; 2017; 1525():349-377. PubMed ID: 27896728
[TBL] [Abstract][Full Text] [Related]
39. Heterogeneity of nucleotide frequencies among evolutionary lineages and phylogenetic inference.
Rosenberg MS; Kumar S
Mol Biol Evol; 2003 Apr; 20(4):610-21. PubMed ID: 12679548
[TBL] [Abstract][Full Text] [Related]
40. Prospects for inferring very large phylogenies by using the neighbor-joining method.
Tamura K; Nei M; Kumar S
Proc Natl Acad Sci U S A; 2004 Jul; 101(30):11030-5. PubMed ID: 15258291
[TBL] [Abstract][Full Text] [Related]
[Previous] [Next] [New Search]