538 related articles for article (PubMed ID: 11058137)
1. Analysis of canonical and non-canonical splice sites in mammalian genomes.
Burset M; Seledtsov IA; Solovyev VV
Nucleic Acids Res; 2000 Nov; 28(21):4364-75. PubMed ID: 11058137
[TBL] [Abstract][Full Text] [Related]
2. SpliceDB: database of canonical and non-canonical mammalian splice sites.
Burset M; Seledtsov IA; Solovyev VV
Nucleic Acids Res; 2001 Jan; 29(1):255-9. PubMed ID: 11125105
[TBL] [Abstract][Full Text] [Related]
3. Information for the Coordinates of Exons (ICE): a human splice sites database.
Chong A; Zhang G; Bajic VB
Genomics; 2004 Oct; 84(4):762-6. PubMed ID: 15475254
[TBL] [Abstract][Full Text] [Related]
4. Genome-wide analyses supported by RNA-Seq reveal non-canonical splice sites in plant genomes.
Pucker B; Brockington SF
BMC Genomics; 2018 Dec; 19(1):980. PubMed ID: 30594132
[TBL] [Abstract][Full Text] [Related]
5. Human GC-AG alternative intron isoforms with weak donor sites show enhanced consensus at acceptor exon positions.
Thanaraj TA; Clark F
Nucleic Acids Res; 2001 Jun; 29(12):2581-93. PubMed ID: 11410667
[TBL] [Abstract][Full Text] [Related]
6. [Analysis, identification and correction of some errors of model refseqs appeared in NCBI Human Gene Database by in silico cloning and experimental verification of novel human genes].
Zhang DL; Ji L; Li YD
Yi Chuan Xue Bao; 2004 May; 31(5):431-43. PubMed ID: 15478601
[TBL] [Abstract][Full Text] [Related]
7. Animal, Fungi, and Plant Genome Sequences Harbor Different Non-Canonical Splice Sites.
Frey K; Pucker B
Cells; 2020 Feb; 9(2):. PubMed ID: 32085510
[TBL] [Abstract][Full Text] [Related]
8. Incorporation of splice site probability models for non-canonical introns improves gene structure prediction in plants.
Sparks ME; Brendel V
Bioinformatics; 2005 Nov; 21 Suppl 3():iii20-30. PubMed ID: 16306388
[TBL] [Abstract][Full Text] [Related]
9. Computational analysis of splicing errors and mutations in human transcripts.
Kurmangaliyev YZ; Gelfand MS
BMC Genomics; 2008 Jan; 9():13. PubMed ID: 18194514
[TBL] [Abstract][Full Text] [Related]
10. Using profiles based on nucleotide hydrophobicity to define essential regions for splicing.
Boldina G; Ivashchenko A; Régnier M
Int J Biol Sci; 2009; 5(1):13-9. PubMed ID: 19119309
[TBL] [Abstract][Full Text] [Related]
11. SpliceFinder: ab initio prediction of splice sites using convolutional neural network.
Wang R; Wang Z; Wang J; Li S
BMC Bioinformatics; 2019 Dec; 20(Suppl 23):652. PubMed ID: 31881982
[TBL] [Abstract][Full Text] [Related]
12. Genome-wide detection of alternative splicing in expressed sequences of human genes.
Modrek B; Resch A; Grasso C; Lee C
Nucleic Acids Res; 2001 Jul; 29(13):2850-9. PubMed ID: 11433032
[TBL] [Abstract][Full Text] [Related]
13. Characterization of the splice sites in GT-AG and GC-AG introns in higher eukaryotes using full-length cDNAs.
Kitamura-Abe S; Itoh H; Washio T; Tsutsumi A; Tomita M
J Bioinform Comput Biol; 2004 Jun; 2(2):309-31. PubMed ID: 15297984
[TBL] [Abstract][Full Text] [Related]
14. Compensatory relationship between splice sites and exonic splicing signals depending on the length of vertebrate introns.
Dewey CN; Rogozin IB; Koonin EV
BMC Genomics; 2006 Dec; 7():311. PubMed ID: 17156453
[TBL] [Abstract][Full Text] [Related]
15. Noncanonical GA and GG 5' Intron Donor Splice Sites Are Common in the Copepod
Robertson HM
G3 (Bethesda); 2017 Dec; 7(12):3967-3969. PubMed ID: 29079681
[TBL] [Abstract][Full Text] [Related]
16. First estimate of the scale of canonical 5' splice site GT>GC variants capable of generating wild-type transcripts.
Lin JH; Tang XY; Boulling A; Zou WB; Masson E; Fichou Y; Raud L; Le Tertre M; Deng SJ; Berlivet I; Ka C; Mort M; Hayden M; Leman R; Houdayer C; Le Gac G; Cooper DN; Li ZS; Férec C; Liao Z; Chen JM
Hum Mutat; 2019 Oct; 40(10):1856-1873. PubMed ID: 31131953
[TBL] [Abstract][Full Text] [Related]
17. Categorization and characterization of transcript-confirmed constitutively and alternatively spliced introns and exons from human.
Clark F; Thanaraj TA
Hum Mol Genet; 2002 Feb; 11(4):451-64. PubMed ID: 11854178
[TBL] [Abstract][Full Text] [Related]
18. FELINES: a utility for extracting and examining EST-defined introns and exons.
Drabenstot SD; Kupfer DM; White JD; Dyer DW; Roe BA; Buchanan KL; Murphy JW
Nucleic Acids Res; 2003 Nov; 31(22):e141. PubMed ID: 14602934
[TBL] [Abstract][Full Text] [Related]
19. Read-Split-Run: an improved bioinformatics pipeline for identification of genome-wide non-canonical spliced regions using RNA-Seq data.
Bai Y; Kinne J; Donham B; Jiang F; Ding L; Hassler JR; Kaufman RJ
BMC Genomics; 2016 Aug; 17 Suppl 7(Suppl 7):503. PubMed ID: 27556805
[TBL] [Abstract][Full Text] [Related]
20. Correlated Evolution of Nucleotide Positions within Splice Sites in Mammals.
Denisov S; Bazykin G; Favorov A; Mironov A; Gelfand M
PLoS One; 2015; 10(12):e0144388. PubMed ID: 26642327
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]