1025 related articles for article (PubMed ID: 11125040)
1. The COG database: new developments in phylogenetic classification of proteins from complete genomes.
Tatusov RL; Natale DA; Garkavtsev IV; Tatusova TA; Shankavaram UT; Rao BS; Kiryutin B; Galperin MY; Fedorova ND; Koonin EV
Nucleic Acids Res; 2001 Jan; 29(1):22-8. PubMed ID: 11125040
[TBL] [Abstract][Full Text] [Related]
2. The COG database: a tool for genome-scale analysis of protein functions and evolution.
Tatusov RL; Galperin MY; Natale DA; Koonin EV
Nucleic Acids Res; 2000 Jan; 28(1):33-6. PubMed ID: 10592175
[TBL] [Abstract][Full Text] [Related]
3. The COG database: an updated version includes eukaryotes.
Tatusov RL; Fedorova ND; Jackson JD; Jacobs AR; Kiryutin B; Koonin EV; Krylov DM; Mazumder R; Mekhedov SL; Nikolskaya AN; Rao BS; Smirnov S; Sverdlov AV; Vasudevan S; Wolf YI; Yin JJ; Natale DA
BMC Bioinformatics; 2003 Sep; 4():41. PubMed ID: 12969510
[TBL] [Abstract][Full Text] [Related]
4. COG database update: focus on microbial diversity, model organisms, and widespread pathogens.
Galperin MY; Wolf YI; Makarova KS; Vera Alvarez R; Landsman D; Koonin EV
Nucleic Acids Res; 2021 Jan; 49(D1):D274-D281. PubMed ID: 33167031
[TBL] [Abstract][Full Text] [Related]
5. Clusters of orthologous genes for 41 archaeal genomes and implications for evolutionary genomics of archaea.
Makarova KS; Sorokin AV; Novichkov PS; Wolf YI; Koonin EV
Biol Direct; 2007 Nov; 2():33. PubMed ID: 18042280
[TBL] [Abstract][Full Text] [Related]
6. Large-scale taxonomic profiling of eukaryotic model organisms: a comparison of orthologous proteins encoded by the human, fly, nematode, and yeast genomes.
Mushegian AR; Garey JR; Martin J; Liu LX
Genome Res; 1998 Jun; 8(6):590-8. PubMed ID: 9647634
[TBL] [Abstract][Full Text] [Related]
7. Proteome-wide analysis of protein function composition reveals the clustering and phylogenetic properties of organisms.
Ling L; Wang J; Cui Y; Li W; Chen R
Mol Phylogenet Evol; 2002 Oct; 25(1):101-11. PubMed ID: 12383754
[TBL] [Abstract][Full Text] [Related]
8. Towards understanding the first genome sequence of a crenarchaeon by genome annotation using clusters of orthologous groups of proteins (COGs).
Natale DA; Shankavaram UT; Galperin MY; Wolf YI; Aravind L; Koonin EV
Genome Biol; 2000; 1(5):RESEARCH0009. PubMed ID: 11178258
[TBL] [Abstract][Full Text] [Related]
9. Expanded microbial genome coverage and improved protein family annotation in the COG database.
Galperin MY; Makarova KS; Wolf YI; Koonin EV
Nucleic Acids Res; 2015 Jan; 43(Database issue):D261-9. PubMed ID: 25428365
[TBL] [Abstract][Full Text] [Related]
10. Functional genomics and enzyme evolution. Homologous and analogous enzymes encoded in microbial genomes.
Galperin MY; Koonin EV
Genetica; 1999; 106(1-2):159-70. PubMed ID: 10710722
[TBL] [Abstract][Full Text] [Related]
11. Investigating 42 candidate orthologous protein groups by molecular evolutionary analysis on genome scale.
Xie T; Ding D
Gene; 2000 Dec; 261(2):305-10. PubMed ID: 11167018
[TBL] [Abstract][Full Text] [Related]
12. A genomic perspective on protein families.
Tatusov RL; Koonin EV; Lipman DJ
Science; 1997 Oct; 278(5338):631-7. PubMed ID: 9381173
[TBL] [Abstract][Full Text] [Related]
13. PCOGR: phylogenetic COG ranking as an online tool to judge the specificity of COGs with respect to freely definable groups of organisms.
Meereis F; Kaufmann M
BMC Bioinformatics; 2004 Oct; 5():150. PubMed ID: 15488147
[TBL] [Abstract][Full Text] [Related]
14. EPPS: mining the COG database by an extended phylogenetic patterns search.
Reichard K; Kaufmann M
Bioinformatics; 2003 Apr; 19(6):784-5. PubMed ID: 12691996
[TBL] [Abstract][Full Text] [Related]
15. A comprehensive evolutionary classification of proteins encoded in complete eukaryotic genomes.
Koonin EV; Fedorova ND; Jackson JD; Jacobs AR; Krylov DM; Makarova KS; Mazumder R; Mekhedov SL; Nikolskaya AN; Rao BS; Rogozin IB; Smirnov S; Sorokin AV; Sverdlov AV; Vasudevan S; Wolf YI; Yin JJ; Natale DA
Genome Biol; 2004; 5(2):R7. PubMed ID: 14759257
[TBL] [Abstract][Full Text] [Related]
16. Microbial genes in the human genome: lateral transfer or gene loss?
Salzberg SL; White O; Peterson J; Eisen JA
Science; 2001 Jun; 292(5523):1903-6. PubMed ID: 11358996
[TBL] [Abstract][Full Text] [Related]
17. Complete genomes in WWW Entrez: data representation and analysis.
Tatusova TA; Karsch-Mizrachi I; Ostell JA
Bioinformatics; 1999; 15(7-8):536-43. PubMed ID: 10487861
[TBL] [Abstract][Full Text] [Related]
18. Using the COG database to improve gene recognition in complete genomes.
Natale DA; Galperin MY; Tatusov RL; Koonin EV
Genetica; 2000; 108(1):9-17. PubMed ID: 11145426
[TBL] [Abstract][Full Text] [Related]
19. Coelomata and not Ecdysozoa: evidence from genome-wide phylogenetic analysis.
Wolf YI; Rogozin IB; Koonin EV
Genome Res; 2004 Jan; 14(1):29-36. PubMed ID: 14707168
[TBL] [Abstract][Full Text] [Related]
20. A general tendency for conservation of protein length across eukaryotic kingdoms.
Wang D; Hsieh M; Li WH
Mol Biol Evol; 2005 Jan; 22(1):142-7. PubMed ID: 15371528
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]