These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.


BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

173 related articles for article (PubMed ID: 11125126)

  • 1. BAliBASE (Benchmark Alignment dataBASE): enhancements for repeats, transmembrane sequences and circular permutations.
    Bahr A; Thompson JD; Thierry JC; Poch O
    Nucleic Acids Res; 2001 Jan; 29(1):323-6. PubMed ID: 11125126
    [TBL] [Abstract][Full Text] [Related]  

  • 2. BAliBASE 3.0: latest developments of the multiple sequence alignment benchmark.
    Thompson JD; Koehl P; Ripp R; Poch O
    Proteins; 2005 Oct; 61(1):127-36. PubMed ID: 16044462
    [TBL] [Abstract][Full Text] [Related]  

  • 3. BAliBASE: a benchmark alignment database for the evaluation of multiple alignment programs.
    Thompson JD; Plewniak F; Poch O
    Bioinformatics; 1999 Jan; 15(1):87-8. PubMed ID: 10068696
    [TBL] [Abstract][Full Text] [Related]  

  • 4. RASCAL: rapid scanning and correction of multiple sequence alignments.
    Thompson JD; Thierry JC; Poch O
    Bioinformatics; 2003 Jun; 19(9):1155-61. PubMed ID: 12801878
    [TBL] [Abstract][Full Text] [Related]  

  • 5. DbW: automatic update of a functional family-specific multiple alignment.
    Prigent V; Thierry JC; Poch O; Plewniak F
    Bioinformatics; 2005 Apr; 21(8):1437-42. PubMed ID: 15598832
    [TBL] [Abstract][Full Text] [Related]  

  • 6. GOAnno: GO annotation based on multiple alignment.
    Chalmel F; Lardenois A; Thompson JD; Muller J; Sahel JA; Léveillard T; Poch O
    Bioinformatics; 2005 May; 21(9):2095-6. PubMed ID: 15647299
    [TBL] [Abstract][Full Text] [Related]  

  • 7. OXBench: a benchmark for evaluation of protein multiple sequence alignment accuracy.
    Raghava GP; Searle SM; Audley PC; Barber JD; Barton GJ
    BMC Bioinformatics; 2003 Oct; 4():47. PubMed ID: 14552658
    [TBL] [Abstract][Full Text] [Related]  

  • 8. A comprehensive comparison of multiple sequence alignment programs.
    Thompson JD; Plewniak F; Poch O
    Nucleic Acids Res; 1999 Jul; 27(13):2682-90. PubMed ID: 10373585
    [TBL] [Abstract][Full Text] [Related]  

  • 9. Multiple alignment of protein sequences with repeats and rearrangements.
    Phuong TM; Do CB; Edgar RC; Batzoglou S
    Nucleic Acids Res; 2006; 34(20):5932-42. PubMed ID: 17068081
    [TBL] [Abstract][Full Text] [Related]  

  • 10. Multiple sequence alignment based on profile alignment of intermediate sequences.
    Lu Y; Sze SH
    J Comput Biol; 2008 Sep; 15(7):767-77. PubMed ID: 18662101
    [TBL] [Abstract][Full Text] [Related]  

  • 11. MUSCLE: multiple sequence alignment with high accuracy and high throughput.
    Edgar RC
    Nucleic Acids Res; 2004; 32(5):1792-7. PubMed ID: 15034147
    [TBL] [Abstract][Full Text] [Related]  

  • 12. An adaptive and iterative algorithm for refining multiple sequence alignment.
    Wang Y; Li KB
    Comput Biol Chem; 2004 Apr; 28(2):141-8. PubMed ID: 15130542
    [TBL] [Abstract][Full Text] [Related]  

  • 13. BLAST 2 Sequences, a new tool for comparing protein and nucleotide sequences.
    Tatusova TA; Madden TL
    FEMS Microbiol Lett; 1999 May; 174(2):247-50. PubMed ID: 10339815
    [TBL] [Abstract][Full Text] [Related]  

  • 14. Improvement in the accuracy of multiple sequence alignment program MAFFT.
    Katoh K; Kuma K; Miyata T; Toh H
    Genome Inform; 2005; 16(1):22-33. PubMed ID: 16362903
    [TBL] [Abstract][Full Text] [Related]  

  • 15. Alignment-Annotator web server: rendering and annotating sequence alignments.
    Gille C; Fähling M; Weyand B; Wieland T; Gille A
    Nucleic Acids Res; 2014 Jul; 42(Web Server issue):W3-6. PubMed ID: 24813445
    [TBL] [Abstract][Full Text] [Related]  

  • 16. ESPript: analysis of multiple sequence alignments in PostScript.
    Gouet P; Courcelle E; Stuart DI; Métoz F
    Bioinformatics; 1999 Apr; 15(4):305-8. PubMed ID: 10320398
    [TBL] [Abstract][Full Text] [Related]  

  • 17. Alignment of helical membrane protein sequences using AlignMe.
    Stamm M; Staritzbichler R; Khafizov K; Forrest LR
    PLoS One; 2013; 8(3):e57731. PubMed ID: 23469223
    [TBL] [Abstract][Full Text] [Related]  

  • 18. Refining multiple sequence alignments with conserved core regions.
    Chakrabarti S; Lanczycki CJ; Panchenko AR; Przytycka TM; Thiessen PA; Bryant SH
    Nucleic Acids Res; 2006; 34(9):2598-606. PubMed ID: 16707662
    [TBL] [Abstract][Full Text] [Related]  

  • 19. A new protein linear motif benchmark for multiple sequence alignment software.
    Perrodou E; Chica C; Poch O; Gibson TJ; Thompson JD
    BMC Bioinformatics; 2008 Apr; 9():213. PubMed ID: 18439277
    [TBL] [Abstract][Full Text] [Related]  

  • 20. MSAID: multiple sequence alignment based on a measure of information discrepancy.
    Zhang M; Fang W; Zhang J; Chi Z
    Comput Biol Chem; 2005 Apr; 29(2):175-81. PubMed ID: 15833445
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 9.