These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.


BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

138 related articles for article (PubMed ID: 11152134)

  • 1. Trp42 rotamers report reduced flexibility when the inhibitor acetyl-pepstatin is bound to HIV-1 protease.
    Ullrich B; Laberge M; Tölgyesi F; Szeltner Z; Polgár L; Fidy J
    Protein Sci; 2000 Nov; 9(11):2232-45. PubMed ID: 11152134
    [TBL] [Abstract][Full Text] [Related]  

  • 2. X-ray structure and conformational dynamics of the HIV-1 protease in complex with the inhibitor SDZ283-910: agreement of time-resolved spectroscopy and molecular dynamics simulations.
    Ringhofer S; Kallen J; Dutzler R; Billich A; Visser AJ; Scholz D; Steinhauser O; Schreiber H; Auer M; Kungl AJ
    J Mol Biol; 1999 Mar; 286(4):1147-59. PubMed ID: 10047488
    [TBL] [Abstract][Full Text] [Related]  

  • 3. Time-resolved fluorescence anisotropy of HIV-1 protease inhibitor complexes correlates with inhibitory activity.
    Kungl AJ; Visser NV; van Hoek A; Visser AJ; Billich A; Schilk A; Gstach H; Auer M
    Biochemistry; 1998 Mar; 37(9):2778-86. PubMed ID: 9485428
    [TBL] [Abstract][Full Text] [Related]  

  • 4. Steady-state kinetics and tryptophan fluorescence properties of halohydrin dehalogenase from Agrobacterium radiobacter. Roles of W139 and W249 in the active site and halide-induced conformational change.
    Tang L; van Merode AE; Lutje Spelberg JH; Fraaije MW; Janssen DB
    Biochemistry; 2003 Dec; 42(47):14057-65. PubMed ID: 14636074
    [TBL] [Abstract][Full Text] [Related]  

  • 5. 1.8A X-ray structure of C95M/C1095F double mutant of tethered HIV-1 protease dimer complexed with acetyl pepstatin.
    Prashar V; Hosur MV
    Biochem Biophys Res Commun; 2004 Oct; 323(4):1229-35. PubMed ID: 15451428
    [TBL] [Abstract][Full Text] [Related]  

  • 6. Mapping the suramin-binding sites of human neutrophil elastase: investigation by fluorescence resonance energy transfer and molecular modeling.
    Mély Y; Cadène M; Sylte I; Bieth JG
    Biochemistry; 1997 Dec; 36(50):15624-31. PubMed ID: 9398290
    [TBL] [Abstract][Full Text] [Related]  

  • 7. Cooperative fluctuations of unliganded and substrate-bound HIV-1 protease: a structure-based analysis on a variety of conformations from crystallography and molecular dynamics simulations.
    Kurt N; Scott WR; Schiffer CA; Haliloglu T
    Proteins; 2003 May; 51(3):409-22. PubMed ID: 12696052
    [TBL] [Abstract][Full Text] [Related]  

  • 8. Cofactor and tryptophan accessibility and unfolding of brain glutamate decarboxylase.
    Rust E; Martin DL; Chen CH
    Arch Biochem Biophys; 2001 Aug; 392(2):333-40. PubMed ID: 11488610
    [TBL] [Abstract][Full Text] [Related]  

  • 9. Structural analysis of lead fullerene-based inhibitor bound to human immunodeficiency virus type 1 protease in solution from molecular dynamics simulations.
    Lee VS; Nimmanpipug P; Aruksakunwong O; Promsri S; Sompornpisut P; Hannongbua S
    J Mol Graph Model; 2007 Sep; 26(2):558-70. PubMed ID: 17468026
    [TBL] [Abstract][Full Text] [Related]  

  • 10. Fluorescence quenching induced by conformational fluctuations in unsolvated polypeptides.
    Shi X; Duft D; Parks JH
    J Phys Chem B; 2008 Oct; 112(40):12801-15. PubMed ID: 18793007
    [TBL] [Abstract][Full Text] [Related]  

  • 11. Fluorescence quenching of dimeric and monomeric forms of yeast hexokinase (PII): effect of substrate binding steady-state and time-resolved fluorescence studies.
    Maity H; Jarori GK
    Physiol Chem Phys Med NMR; 2002; 34(1):43-60. PubMed ID: 12403274
    [TBL] [Abstract][Full Text] [Related]  

  • 12. A molecular dynamics study comparing a wild-type with a multiple drug resistant HIV protease: differences in flap and aspartate 25 cavity dimensions.
    Seibold SA; Cukier RI
    Proteins; 2007 Nov; 69(3):551-65. PubMed ID: 17623840
    [TBL] [Abstract][Full Text] [Related]  

  • 13. Conformational dynamics of DnaB helicase upon DNA and nucleotide binding: analysis by intrinsic tryptophan fluorescence quenching.
    Flowers S; Biswas EE; Biswas SB
    Biochemistry; 2003 Feb; 42(7):1910-21. PubMed ID: 12590577
    [TBL] [Abstract][Full Text] [Related]  

  • 14. Organization and dynamics of tryptophan residues in tetrameric and monomeric soybean agglutinin: studies by steady-state and time-resolved fluorescence, phosphorescence and chemical modification.
    Molla AR; Maity SS; Ghosh S; Mandal DK
    Biochimie; 2009 Jul; 91(7):857-67. PubMed ID: 19383525
    [TBL] [Abstract][Full Text] [Related]  

  • 15. Relation between sequence and structure of HIV-1 protease inhibitor complexes: a model system for the analysis of protein flexibility.
    Zoete V; Michielin O; Karplus M
    J Mol Biol; 2002 Jan; 315(1):21-52. PubMed ID: 11771964
    [TBL] [Abstract][Full Text] [Related]  

  • 16. Theoretical studies of relaxation of a monomeric subunit of HIV-1 protease in water using molecular dynamics.
    Venable RM; Brooks BR; Carson FW
    Proteins; 1993 Apr; 15(4):374-84. PubMed ID: 8460108
    [TBL] [Abstract][Full Text] [Related]  

  • 17. Molecular dynamics simulations of ligand-induced flap closing in HIV-1 protease approach X-ray resolution: establishing the role of bound water in the flap closing mechanism.
    Singh G; Senapati S
    Biochemistry; 2008 Oct; 47(40):10657-64. PubMed ID: 18785756
    [TBL] [Abstract][Full Text] [Related]  

  • 18. Exploring the proline-dependent conformational change in the multifunctional PutA flavoprotein by tryptophan fluorescence spectroscopy.
    Zhu W; Becker DF
    Biochemistry; 2005 Sep; 44(37):12297-306. PubMed ID: 16156643
    [TBL] [Abstract][Full Text] [Related]  

  • 19. Correlation of tryptophan fluorescence spectral shifts and lifetimes arising directly from heterogeneous environment.
    Pan CP; Muiño PL; Barkley MD; Callis PR
    J Phys Chem B; 2011 Mar; 115(12):3245-53. PubMed ID: 21370844
    [TBL] [Abstract][Full Text] [Related]  

  • 20. Molecular dynamics simulations of Trp side-chain conformational flexibility in the gramicidin A channel.
    Bingham NC; Smith NE; Cross TA; Busath DD
    Biopolymers; 2003; 71(5):593-600. PubMed ID: 14635099
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 7.