221 related articles for article (PubMed ID: 11162082)
1. Molecular dynamics simulation reveals conformational switching of water-mediated uracil-cytosine base-pairs in an RNA duplex.
Schneider C; Brandl M; Sühnel J
J Mol Biol; 2001 Jan; 305(4):659-67. PubMed ID: 11162082
[TBL] [Abstract][Full Text] [Related]
2. Molecular dynamics of the frame-shifting pseudoknot from beet western yellows virus: the role of non-Watson-Crick base-pairing, ordered hydration, cation binding and base mutations on stability and unfolding.
Csaszar K; Spacková N; Stefl R; Sponer J; Leontis NB
J Mol Biol; 2001 Nov; 313(5):1073-91. PubMed ID: 11700064
[TBL] [Abstract][Full Text] [Related]
3. Structure model and physicochemical properties of the C-U mismatch pair in the double stranded RNA in solution.
Tanaka Y; Kojima C; Yamazaki T; Kyogoku Y; Miyashita S; Ono A; Kainosho M
Nucleic Acids Symp Ser; 1997; (37):271-2. PubMed ID: 9586104
[TBL] [Abstract][Full Text] [Related]
4. Crystal structure of an RNA double helix incorporating a track of non-Watson-Crick base pairs.
Holbrook SR; Cheong C; Tinoco I; Kim SH
Nature; 1991 Oct; 353(6344):579-81. PubMed ID: 1922368
[TBL] [Abstract][Full Text] [Related]
5. The crystal structure of the octamer [r(guauaca)dC]2 with six Watson-Crick base-pairs and two 3' overhang residues.
Shi K; Biswas R; Mitra SN; Sundaralingam M
J Mol Biol; 2000 May; 299(1):113-22. PubMed ID: 10860726
[TBL] [Abstract][Full Text] [Related]
6. Aminoglycoside binding in the major groove of duplex RNA: the thermodynamic and electrostatic forces that govern recognition.
Jin E; Katritch V; Olson WK; Kharatisvili M; Abagyan R; Pilch DS
J Mol Biol; 2000 Apr; 298(1):95-110. PubMed ID: 10756107
[TBL] [Abstract][Full Text] [Related]
7. Water and ion binding around r(UpA)12 and d(TpA)12 oligomers--comparison with RNA and DNA (CpG)12 duplexes.
Auffinger P; Westhof E
J Mol Biol; 2001 Feb; 305(5):1057-72. PubMed ID: 11162114
[TBL] [Abstract][Full Text] [Related]
8. Parallel DNA double helices incorporating isoG or m5isoC bases studied by FTIR, CD and molecular modeling.
Geinguenaud F; Mondragon-Sanchez JA; Liquier J; Shchyolkina AK; Klement R; Arndt-Jovin DJ; Jovin TM; Taillandier E
Spectrochim Acta A Mol Biomol Spectrosc; 2005 Feb; 61(4):579-87. PubMed ID: 15649787
[TBL] [Abstract][Full Text] [Related]
9. Nuclear magnetic resonance spectroscopy and molecular modeling reveal that different hydrogen bonding patterns are possible for G.U pairs: one hydrogen bond for each G.U pair in r(GGCGUGCC)(2) and two for each G.U pair in r(GAGUGCUC)(2).
Chen X; McDowell JA; Kierzek R; Krugh TR; Turner DH
Biochemistry; 2000 Aug; 39(30):8970-82. PubMed ID: 10913310
[TBL] [Abstract][Full Text] [Related]
10. Unrestrained 5 ns molecular dynamics simulation of a cisplatin-DNA 1,2-GG adduct provides a rationale for the NMR features and reveals increased conformational flexibility at the platinum binding site.
Elizondo-Riojas MA; Kozelka J
J Mol Biol; 2001 Dec; 314(5):1227-43. PubMed ID: 11743736
[TBL] [Abstract][Full Text] [Related]
11. Conformational features of the four successive non-Watson-Crick base pairs in RNA duplex.
Fujii S; Tanaka Y; Uesugi S; Tanaka T; Sakata T; Hiroaki H
Nucleic Acids Symp Ser; 1992; (27):63-4. PubMed ID: 1283916
[TBL] [Abstract][Full Text] [Related]
12. Structure of an RNA internal loop consisting of tandem C-A+ base pairs.
Jang SB; Hung LW; Chi YI; Holbrook EL; Carter RJ; Holbrook SR
Biochemistry; 1998 Aug; 37(34):11726-31. PubMed ID: 9718295
[TBL] [Abstract][Full Text] [Related]
13. Interaction between the Z-type DNA duplex and 1,3-propanediamine: crystal structure of d(CACGTG)2 at 1.2 A resolution.
Narayana N; Shamala N; Ganesh KN; Viswamitra MA
Biochemistry; 2006 Jan; 45(4):1200-11. PubMed ID: 16430216
[TBL] [Abstract][Full Text] [Related]
14. Solution structure of a DNA double helix incorporating four consecutive non-Watson-Crick base-pairs.
Chou SH; Chin KH
J Mol Biol; 2001 Sep; 312(4):769-81. PubMed ID: 11575931
[TBL] [Abstract][Full Text] [Related]
15. Structures of two RNA octamers containing tandem G.A base pairs.
Jang SB; Baeyens K; Jeong MS; SantaLucia J; Turner D; Holbrook SR
Acta Crystallogr D Biol Crystallogr; 2004 May; 60(Pt 5):829-35. PubMed ID: 15103128
[TBL] [Abstract][Full Text] [Related]
16. Molecular dynamics simulations of sarcin-ricin rRNA motif.
Spacková N; Sponer J
Nucleic Acids Res; 2006; 34(2):697-708. PubMed ID: 16456030
[TBL] [Abstract][Full Text] [Related]
17. The two faces of the Escherichia coli 23 S rRNA sarcin/ricin domain: the structure at 1.11 A resolution.
Correll CC; Wool IG; Munishkin A
J Mol Biol; 1999 Sep; 292(2):275-87. PubMed ID: 10493875
[TBL] [Abstract][Full Text] [Related]
18. Water-mediated contacts in the trp-repressor operator complex recognition process.
Wibowo FR; Rauch C; Trieb M; Wellenzohn B; Liedl KR
Biopolymers; 2004 Apr; 73(6):668-81. PubMed ID: 15048770
[TBL] [Abstract][Full Text] [Related]
19. DNA interstrand crosslink formation by mechlorethamine at a cytosine-cytosine mismatch pair: kinetics and sequence dependence.
Romero RM; Rojsitthisak P; Haworth IS
Arch Biochem Biophys; 2001 Feb; 386(2):143-53. PubMed ID: 11368336
[TBL] [Abstract][Full Text] [Related]
20. Water and ion binding around RNA and DNA (C,G) oligomers.
Auffinger P; Westhof E
J Mol Biol; 2000 Jul; 300(5):1113-31. PubMed ID: 10903858
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]
