365 related articles for article (PubMed ID: 11162106)
1. Rotamer strain energy in protein helices - quantification of a major force opposing protein folding.
Penel S; Doig AJ
J Mol Biol; 2001 Jan; 305(4):961-8. PubMed ID: 11162106
[TBL] [Abstract][Full Text] [Related]
2. Free energies of amino acid side-chain rotamers in alpha-helices, beta-sheets and alpha-helix N-caps.
Stapley BJ; Doig AJ
J Mol Biol; 1997 Sep; 272(3):456-64. PubMed ID: 9325103
[TBL] [Abstract][Full Text] [Related]
3. Side-chain conformational entropy in protein folding.
Doig AJ; Sternberg MJ
Protein Sci; 1995 Nov; 4(11):2247-51. PubMed ID: 8563620
[TBL] [Abstract][Full Text] [Related]
4. Role of main-chain electrostatics, hydrophobic effect and side-chain conformational entropy in determining the secondary structure of proteins.
Avbelj F; Fele L
J Mol Biol; 1998 Jun; 279(3):665-84. PubMed ID: 9641985
[TBL] [Abstract][Full Text] [Related]
5. Side-chain entropy effects on protein secondary structure formation.
Chellgren BW; Creamer TP
Proteins; 2006 Feb; 62(2):411-20. PubMed ID: 16315271
[TBL] [Abstract][Full Text] [Related]
6. Empirical scale of side-chain conformational entropy in protein folding.
Pickett SD; Sternberg MJ
J Mol Biol; 1993 Jun; 231(3):825-39. PubMed ID: 8515453
[TBL] [Abstract][Full Text] [Related]
7. Free energy determinants of secondary structure formation: I. alpha-Helices.
Yang AS; Honig B
J Mol Biol; 1995 Sep; 252(3):351-65. PubMed ID: 7563056
[TBL] [Abstract][Full Text] [Related]
8. Rotamers: to be or not to be? An analysis of amino acid side-chain conformations in globular proteins.
Schrauber H; Eisenhaber F; Argos P
J Mol Biol; 1993 Mar; 230(2):592-612. PubMed ID: 8464066
[TBL] [Abstract][Full Text] [Related]
9. Statistical and conformational analysis of the electron density of protein side chains.
Shapovalov MV; Dunbrack RL
Proteins; 2007 Feb; 66(2):279-303. PubMed ID: 17080462
[TBL] [Abstract][Full Text] [Related]
10. Importance of chirality and reduced flexibility of protein side chains: a study with square and tetrahedral lattice models.
Zhang J; Chen Y; Chen R; Liang J
J Chem Phys; 2004 Jul; 121(1):592-603. PubMed ID: 15260581
[TBL] [Abstract][Full Text] [Related]
11. Amino acid conformational preferences and solvation of polar backbone atoms in peptides and proteins.
Avbelj F
J Mol Biol; 2000 Jul; 300(5):1335-59. PubMed ID: 10903873
[TBL] [Abstract][Full Text] [Related]
12. The occurrence of C--H...O hydrogen bonds in alpha-helices and helix termini in globular proteins.
Manikandan K; Ramakumar S
Proteins; 2004 Sep; 56(4):768-81. PubMed ID: 15281129
[TBL] [Abstract][Full Text] [Related]
13. Estimation of changes in side chain configurational entropy in binding and folding: general methods and application to helix formation.
Lee KH; Xie D; Freire E; Amzel LM
Proteins; 1994 Sep; 20(1):68-84. PubMed ID: 7824524
[TBL] [Abstract][Full Text] [Related]
14. The nature of the free energy barriers to two-state folding.
Akmal A; Muñoz V
Proteins; 2004 Oct; 57(1):142-52. PubMed ID: 15326600
[TBL] [Abstract][Full Text] [Related]
15. Flexibility of "polyunsaturated fatty acid chains" and peptide backbones: A comparative ab initio study.
Law JM; Setiadi DH; Chass GA; Csizmadia IG; Viskolcz B
J Phys Chem A; 2005 Jan; 109(3):520-33. PubMed ID: 16833374
[TBL] [Abstract][Full Text] [Related]
16. Computational protein design with side-chain conformational entropy.
Sciretti D; Bruscolini P; Pelizzola A; Pretti M; Jaramillo A
Proteins; 2009 Jan; 74(1):176-91. PubMed ID: 18618711
[TBL] [Abstract][Full Text] [Related]
17. The energetics of off-rotamer protein side-chain conformations.
Petrella RJ; Karplus M
J Mol Biol; 2001 Oct; 312(5):1161-75. PubMed ID: 11580256
[TBL] [Abstract][Full Text] [Related]
18. Effects of side-chain packing on the formation of secondary structures in protein folding.
Yasuda S; Yoshidome T; Oshima H; Kodama R; Harano Y; Kinoshita M
J Chem Phys; 2010 Feb; 132(6):065105. PubMed ID: 20151761
[TBL] [Abstract][Full Text] [Related]
19. Folding is not required for bilayer insertion: replica exchange simulations of an alpha-helical peptide with an explicit lipid bilayer.
Nymeyer H; Woolf TB; Garcia AE
Proteins; 2005 Jun; 59(4):783-90. PubMed ID: 15828005
[TBL] [Abstract][Full Text] [Related]
20. Entropic benefit of a cross-link in protein association.
Zaman MH; Berry RS; Sosnick TR
Proteins; 2002 Aug; 48(2):341-51. PubMed ID: 12112701
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]
