724 related articles for article (PubMed ID: 11162114)
1. Water and ion binding around r(UpA)12 and d(TpA)12 oligomers--comparison with RNA and DNA (CpG)12 duplexes.
Auffinger P; Westhof E
J Mol Biol; 2001 Feb; 305(5):1057-72. PubMed ID: 11162114
[TBL] [Abstract][Full Text] [Related]
2. Water and ion binding around RNA and DNA (C,G) oligomers.
Auffinger P; Westhof E
J Mol Biol; 2000 Jul; 300(5):1113-31. PubMed ID: 10903858
[TBL] [Abstract][Full Text] [Related]
3. DNA structure: what's in charge?
McConnell KJ; Beveridge DL
J Mol Biol; 2000 Dec; 304(5):803-20. PubMed ID: 11124028
[TBL] [Abstract][Full Text] [Related]
4. Water molecules in DNA recognition II: a molecular dynamics view of the structure and hydration of the trp operator.
Bonvin AM; Sunnerhagen M; Otting G; van Gunsteren WF
J Mol Biol; 1998 Oct; 282(4):859-73. PubMed ID: 9743632
[TBL] [Abstract][Full Text] [Related]
5. Hydration of [d(CGC)r(aaa)d(TTTGCG)](2).
Hsu ST; Chou MT; Chou SH; Huang WC; Cheng JW
J Mol Biol; 2000 Feb; 295(5):1129-37. PubMed ID: 10653692
[TBL] [Abstract][Full Text] [Related]
6. A single 2'-hydroxyl group converts B-DNA to A-DNA. Crystal structure of the DNA-RNA chimeric decamer duplex d(CCGGC)r(G)d(CCGG) with a novel intermolecular G-C base-paired quadruplet.
Ban C; Ramakrishnan B; Sundaralingam M
J Mol Biol; 1994 Feb; 236(1):275-85. PubMed ID: 7508984
[TBL] [Abstract][Full Text] [Related]
7. 1 A crystal structures of B-DNA reveal sequence-specific binding and groove-specific bending of DNA by magnesium and calcium.
Chiu TK; Dickerson RE
J Mol Biol; 2000 Aug; 301(4):915-45. PubMed ID: 10966796
[TBL] [Abstract][Full Text] [Related]
8. Molecular dynamics simulations of A. T-rich oligomers: sequence-specific binding of Na+ in the minor groove of B-DNA.
Mocci F; Saba G
Biopolymers; 2003 Apr; 68(4):471-85. PubMed ID: 12666173
[TBL] [Abstract][Full Text] [Related]
9. Absence of minor groove monovalent cations in the crosslinked dodecamer C-G-C-G-A-A-T-T-C-G-C-G.
Chiu TK; Kaczor-Grzeskowiak M; Dickerson RE
J Mol Biol; 1999 Sep; 292(3):589-608. PubMed ID: 10497024
[TBL] [Abstract][Full Text] [Related]
10. Molecular dynamics of the frame-shifting pseudoknot from beet western yellows virus: the role of non-Watson-Crick base-pairing, ordered hydration, cation binding and base mutations on stability and unfolding.
Csaszar K; Spacková N; Stefl R; Sponer J; Leontis NB
J Mol Biol; 2001 Nov; 313(5):1073-91. PubMed ID: 11700064
[TBL] [Abstract][Full Text] [Related]
11. A dimeric DNA interface stabilized by stacked A.(G.G.G.G).A hexads and coordinated monovalent cations.
Kettani A; Gorin A; Majumdar A; Hermann T; Skripkin E; Zhao H; Jones R; Patel DJ
J Mol Biol; 2000 Mar; 297(3):627-44. PubMed ID: 10731417
[TBL] [Abstract][Full Text] [Related]
12. Hydration of B-DNA: comparison between the water network around poly(dG).poly(dC) and poly(dG-dC).poly(dG-dC) on the basis of Monte Carlo computations.
Eisenhaber F; Tumanyan VG; Eisenmenger F; Gunia W
Biopolymers; 1989 Mar; 28(3):741-61. PubMed ID: 2706312
[TBL] [Abstract][Full Text] [Related]
13. Structure, dynamics and hydration of the nogalamycin-d(ATGCAT)2Complex determined by NMR and molecular dynamics simulations in solution.
Williams HE; Searle MS
J Mol Biol; 1999 Jul; 290(3):699-716. PubMed ID: 10395824
[TBL] [Abstract][Full Text] [Related]
14. The hydration of nucleic acid duplexes as assessed by a combination of volumetric and structural techniques.
Chalikian TV; Völker J; Srinivasan AR; Olson WK; Breslauer KJ
Biopolymers; 1999 Oct; 50(5):459-71. PubMed ID: 10479730
[TBL] [Abstract][Full Text] [Related]
15. Crystal structures of A-DNA duplexes.
Wahl MC; Sundaralingam M
Biopolymers; 1997; 44(1):45-63. PubMed ID: 9097733
[TBL] [Abstract][Full Text] [Related]
16. DNA interstrand crosslink formation by mechlorethamine at a cytosine-cytosine mismatch pair: kinetics and sequence dependence.
Romero RM; Rojsitthisak P; Haworth IS
Arch Biochem Biophys; 2001 Feb; 386(2):143-53. PubMed ID: 11368336
[TBL] [Abstract][Full Text] [Related]
17. Structural dynamics of the box C/D RNA kink-turn and its complex with proteins: the role of the A-minor 0 interaction, long-residency water bridges, and structural ion-binding sites revealed by molecular simulations.
Spacková N; Réblová K; Sponer J
J Phys Chem B; 2010 Aug; 114(32):10581-93. PubMed ID: 20701388
[TBL] [Abstract][Full Text] [Related]
18. Structure of the hydration shells of oligo(dA-dT).oligo(dA-dT) and oligo(dA).oligo(dT) tracts in B-type conformation on the basis of Monte Carlo calculations.
Eisenhaber F; Tumanyan VG; Abagyan RA
Biopolymers; 1990; 30(5-6):563-81. PubMed ID: 2265229
[TBL] [Abstract][Full Text] [Related]
19. Hydration of RNA base pairs.
Auffinger P; Westhof E
J Biomol Struct Dyn; 1998 Dec; 16(3):693-707. PubMed ID: 10052625
[TBL] [Abstract][Full Text] [Related]
20. NMR and molecular dynamics studies of the hydration of a zinc finger-DNA complex.
Tsui V; Radhakrishnan I; Wright PE; Case DA
J Mol Biol; 2000 Oct; 302(5):1101-17. PubMed ID: 11183777
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]
