333 related articles for article (PubMed ID: 11214326)
1. Three key residues form a critical contact network in a protein folding transition state.
Vendruscolo M; Paci E; Dobson CM; Karplus M
Nature; 2001 Feb; 409(6820):641-5. PubMed ID: 11214326
[TBL] [Abstract][Full Text] [Related]
2. Mutational analysis of acylphosphatase suggests the importance of topology and contact order in protein folding.
Chiti F; Taddei N; White PM; Bucciantini M; Magherini F; Stefani M; Dobson CM
Nat Struct Biol; 1999 Nov; 6(11):1005-9. PubMed ID: 10542090
[TBL] [Abstract][Full Text] [Related]
3. Lattice models for proteins reveal multiple folding nuclei for nucleation-collapse mechanism.
Klimov DK; Thirumalai D
J Mol Biol; 1998 Sep; 282(2):471-92. PubMed ID: 9735420
[TBL] [Abstract][Full Text] [Related]
4. Factors governing the foldability of proteins.
Klimov DK; Thirumalai D
Proteins; 1996 Dec; 26(4):411-41. PubMed ID: 8990496
[TBL] [Abstract][Full Text] [Related]
5. Identifying folding nucleus based on residue contact networks of proteins.
Li J; Wang J; Wang W
Proteins; 2008 Jun; 71(4):1899-907. PubMed ID: 18175318
[TBL] [Abstract][Full Text] [Related]
6. Commitment and nucleation in the protein G transition state.
Hubner IA; Shimada J; Shakhnovich EI
J Mol Biol; 2004 Feb; 336(3):745-61. PubMed ID: 15095985
[TBL] [Abstract][Full Text] [Related]
7. Folding kinetics of a lattice protein via a forward flux sampling approach.
Borrero EE; Escobedo FA
J Chem Phys; 2006 Oct; 125(16):164904. PubMed ID: 17092136
[TBL] [Abstract][Full Text] [Related]
8. Conserved residues and the mechanism of protein folding.
Shakhnovich E; Abkevich V; Ptitsyn O
Nature; 1996 Jan; 379(6560):96-8. PubMed ID: 8538750
[TBL] [Abstract][Full Text] [Related]
9. Fold assembly of small proteins using monte carlo simulations driven by restraints derived from multiple sequence alignments.
Ortiz AR; Kolinski A; Skolnick J
J Mol Biol; 1998 Mar; 277(2):419-48. PubMed ID: 9514747
[TBL] [Abstract][Full Text] [Related]
10. The folding process of acylphosphatase from Escherichia coli is remarkably accelerated by the presence of a disulfide bond.
Parrini C; Bemporad F; Baroncelli A; Gianni S; Travaglini-Allocatelli C; Kohn JE; Ramazzotti M; Chiti F; Taddei N
J Mol Biol; 2008 Jun; 379(5):1107-18. PubMed ID: 18495159
[TBL] [Abstract][Full Text] [Related]
11. Importance of hydrophobic cluster formation through long-range contacts in the folding transition state of two-state proteins.
Selvaraj S; Gromiha MM
Proteins; 2004 Jun; 55(4):1023-35. PubMed ID: 15146499
[TBL] [Abstract][Full Text] [Related]
12. Stiffness of the distal loop restricts the structural heterogeneity of the transition state ensemble in SH3 domains.
Klimov DK; Thirumalai D
J Mol Biol; 2002 Apr; 317(5):721-37. PubMed ID: 11955020
[TBL] [Abstract][Full Text] [Related]
13. The family feud: do proteins with similar structures fold via the same pathway?
Zarrine-Afsar A; Larson SM; Davidson AR
Curr Opin Struct Biol; 2005 Feb; 15(1):42-9. PubMed ID: 15718132
[TBL] [Abstract][Full Text] [Related]
14. Do proteins with similar folds have similar transition state structures? A diffuse transition state of the 169 residue apoflavodoxin.
Bueno M; Ayuso-Tejedor S; Sancho J
J Mol Biol; 2006 Jun; 359(3):813-24. PubMed ID: 16647718
[TBL] [Abstract][Full Text] [Related]
15. Contact pair dynamics during folding of two small proteins: chicken villin head piece and the Alzheimer protein beta-amyloid.
Mukherjee A; Bagchi B
J Chem Phys; 2004 Jan; 120(3):1602-12. PubMed ID: 15268287
[TBL] [Abstract][Full Text] [Related]
16. The folding pathway of ubiquitin from all-atom molecular dynamics simulations.
Marianayagam NJ; Jackson SE
Biophys Chem; 2004 Oct; 111(2):159-71. PubMed ID: 15381313
[TBL] [Abstract][Full Text] [Related]
17. Structural characterization of the transition state for folding of muscle acylphosphatase.
Chiti F; Taddei N; van Nuland NA; Magherini F; Stefani M; Ramponi G; Dobson CM
J Mol Biol; 1998 Nov; 283(4):893-903. PubMed ID: 9790847
[TBL] [Abstract][Full Text] [Related]
18. Key role of coulombic interactions for the folding transition state of the cold shock protein.
Garcia-Mira MM; Schmid FX
J Mol Biol; 2006 Dec; 364(3):458-68. PubMed ID: 17020767
[TBL] [Abstract][Full Text] [Related]
19. Constrained proper sampling of conformations of transition state ensemble of protein folding.
Lin M; Zhang J; Lu HM; Chen R; Liang J
J Chem Phys; 2011 Feb; 134(7):075103. PubMed ID: 21341875
[TBL] [Abstract][Full Text] [Related]
20. Protein conformational transitions coupled to binding in molecular recognition of unstructured proteins: deciphering the effect of intermolecular interactions on computational structure prediction of the p27Kip1 protein bound to the cyclin A-cyclin-dependent kinase 2 complex.
Verkhivker GM
Proteins; 2005 Feb; 58(3):706-16. PubMed ID: 15609350
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]
