821 related articles for article (PubMed ID: 11230160)
1. Genome alignment, evolution of prokaryotic genome organization, and prediction of gene function using genomic context.
Wolf YI; Rogozin IB; Kondrashov AS; Koonin EV
Genome Res; 2001 Mar; 11(3):356-72. PubMed ID: 11230160
[TBL] [Abstract][Full Text] [Related]
2. Computational approaches for the analysis of gene neighbourhoods in prokaryotic genomes.
Rogozin IB; Makarova KS; Wolf YI; Koonin EV
Brief Bioinform; 2004 Jun; 5(2):131-49. PubMed ID: 15260894
[TBL] [Abstract][Full Text] [Related]
3. Genome trees constructed using five different approaches suggest new major bacterial clades.
Wolf YI; Rogozin IB; Grishin NV; Tatusov RL; Koonin EV
BMC Evol Biol; 2001 Oct; 1():8. PubMed ID: 11734060
[TBL] [Abstract][Full Text] [Related]
4. A DNA repair system specific for thermophilic Archaea and bacteria predicted by genomic context analysis.
Makarova KS; Aravind L; Grishin NV; Rogozin IB; Koonin EV
Nucleic Acids Res; 2002 Jan; 30(2):482-96. PubMed ID: 11788711
[TBL] [Abstract][Full Text] [Related]
5. Prediction of the archaeal exosome and its connections with the proteasome and the translation and transcription machineries by a comparative-genomic approach.
Koonin EV; Wolf YI; Aravind L
Genome Res; 2001 Feb; 11(2):240-52. PubMed ID: 11157787
[TBL] [Abstract][Full Text] [Related]
6. Algorithms for computing parsimonious evolutionary scenarios for genome evolution, the last universal common ancestor and dominance of horizontal gene transfer in the evolution of prokaryotes.
Mirkin BG; Fenner TI; Galperin MY; Koonin EV
BMC Evol Biol; 2003 Jan; 3():2. PubMed ID: 12515582
[TBL] [Abstract][Full Text] [Related]
7. Inferring functional relationships from conservation of gene order.
Moreno-Hagelsieb G
Methods Mol Biol; 2008; 453():181-99. PubMed ID: 18712303
[TBL] [Abstract][Full Text] [Related]
8. Comparison of archaeal and bacterial genomes: computer analysis of protein sequences predicts novel functions and suggests a chimeric origin for the archaea.
Koonin EV; Mushegian AR; Galperin MY; Walker DR
Mol Microbiol; 1997 Aug; 25(4):619-37. PubMed ID: 9379893
[TBL] [Abstract][Full Text] [Related]
9. Evolution of mosaic operons by horizontal gene transfer and gene displacement in situ.
Omelchenko MV; Makarova KS; Wolf YI; Rogozin IB; Koonin EV
Genome Biol; 2003; 4(9):R55. PubMed ID: 12952534
[TBL] [Abstract][Full Text] [Related]
10. Evolution of gene order conservation in prokaryotes.
Tamames J
Genome Biol; 2001; 2(6):RESEARCH0020. PubMed ID: 11423009
[TBL] [Abstract][Full Text] [Related]
11. Inferring Functional Relationships from Conservation of Gene Order.
Moreno-Hagelsieb G
Methods Mol Biol; 2017; 1526():41-63. PubMed ID: 27896735
[TBL] [Abstract][Full Text] [Related]
12. Computational identification of operons in microbial genomes.
Zheng Y; Szustakowski JD; Fortnow L; Roberts RJ; Kasif S
Genome Res; 2002 Aug; 12(8):1221-30. PubMed ID: 12176930
[TBL] [Abstract][Full Text] [Related]
13. Clusters of orthologous genes for 41 archaeal genomes and implications for evolutionary genomics of archaea.
Makarova KS; Sorokin AV; Novichkov PS; Wolf YI; Koonin EV
Biol Direct; 2007 Nov; 2():33. PubMed ID: 18042280
[TBL] [Abstract][Full Text] [Related]
14. Detection of operons.
Yan Y; Moult J
Proteins; 2006 Aug; 64(3):615-28. PubMed ID: 16755590
[TBL] [Abstract][Full Text] [Related]
15. Operon conservation from the point of view of Escherichia coli, and inference of functional interdependence of gene products from genome context.
Moreno-Hagelsieb G; Collado-Vides J
In Silico Biol; 2002; 2(2):87-95. PubMed ID: 12066843
[TBL] [Abstract][Full Text] [Related]
16. Evolution of mal ABC transporter operons in the Thermococcales and Thermotogales.
Noll KM; Lapierre P; Gogarten JP; Nanavati DM
BMC Evol Biol; 2008 Jan; 8():7. PubMed ID: 18197971
[TBL] [Abstract][Full Text] [Related]
17. Prediction of transcription regulatory sites in Archaea by a comparative genomic approach.
Gelfand MS; Koonin EV; Mironov AA
Nucleic Acids Res; 2000 Feb; 28(3):695-705. PubMed ID: 10637320
[TBL] [Abstract][Full Text] [Related]
18. Ancient origin of the tryptophan operon and the dynamics of evolutionary change.
Xie G; Keyhani NO; Bonner CA; Jensen RA
Microbiol Mol Biol Rev; 2003 Sep; 67(3):303-42, table of contents. PubMed ID: 12966138
[TBL] [Abstract][Full Text] [Related]
19. Automatic detection of conserved gene clusters in multiple genomes by graph comparison and P-quasi grouping.
Fujibuchi W; Ogata H; Matsuda H; Kanehisa M
Nucleic Acids Res; 2000 Oct; 28(20):4029-36. PubMed ID: 11024184
[TBL] [Abstract][Full Text] [Related]
20. Organisation of the S10, spc and alpha ribosomal protein gene clusters in prokaryotic genomes.
Coenye T; Vandamme P
FEMS Microbiol Lett; 2005 Jan; 242(1):117-26. PubMed ID: 15621428
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]
