138 related articles for article (PubMed ID: 11245247)
1. A refined prediction method for gel retardation of DNA oligonucleotides from dinucleotide step parameters: reconciliation of DNA bending models with crystal structure data.
Liu Y; Beveridge DL
J Biomol Struct Dyn; 2001 Feb; 18(4):505-26. PubMed ID: 11245247
[TBL] [Abstract][Full Text] [Related]
2. Molecular dynamics simulations of B '-DNA: sequence effects on A-tract-induced bending and flexibility.
McConnell KJ; Beveridge DL
J Mol Biol; 2001 Nov; 314(1):23-40. PubMed ID: 11724529
[TBL] [Abstract][Full Text] [Related]
3. Molecular dynamics simulations of an oligonucleotide duplex with adenine tracts phased by a full helix turn.
Young MA; Beveridge DL
J Mol Biol; 1998 Aug; 281(4):675-87. PubMed ID: 9710539
[TBL] [Abstract][Full Text] [Related]
4. The crystal structure of C-C-A-T-T-A-A-T-G-G. Implications for bending of B-DNA at T-A steps.
Goodsell DS; Kaczor-Grzeskowiak M; Dickerson RE
J Mol Biol; 1994 May; 239(1):79-96. PubMed ID: 8196049
[TBL] [Abstract][Full Text] [Related]
5. Molecular dynamics simulations of DNA curvature and flexibility: helix phasing and premelting.
Beveridge DL; Dixit SB; Barreiro G; Thayer KM
Biopolymers; 2004 Feb; 73(3):380-403. PubMed ID: 14755574
[TBL] [Abstract][Full Text] [Related]
6. MPD and DNA bending in crystals and in solution.
Dickerson RE; Goodsell D; Kopka ML
J Mol Biol; 1996 Feb; 256(1):108-25. PubMed ID: 8609604
[TBL] [Abstract][Full Text] [Related]
7. Structural features of B-DNA dodecamer crystal structures: influence of crystal packing versus base sequence.
Ghosh A; Bansal M
Indian J Biochem Biophys; 2001; 38(1-2):7-15. PubMed ID: 11563334
[TBL] [Abstract][Full Text] [Related]
8. X-ray and solution studies of DNA oligomers and implications for the structural basis of A-tract-dependent curvature.
Shatzky-Schwartz M; Arbuckle ND; Eisenstein M; Rabinovich D; Bareket-Samish A; Haran TE; Luisi BF; Shakked Z
J Mol Biol; 1997 Apr; 267(3):595-623. PubMed ID: 9126841
[TBL] [Abstract][Full Text] [Related]
9. Prediction of atomic structure from sequence for double helical DNA oligomers.
Farwer J; Packer MJ; Hunter CA
Biopolymers; 2006 Jan; 81(1):51-61. PubMed ID: 16184626
[TBL] [Abstract][Full Text] [Related]
10. An assessment of three dinucleotide parameters to predict DNA curvature by quantitative comparison with experimental data.
Kanhere A; Bansal M
Nucleic Acids Res; 2003 May; 31(10):2647-58. PubMed ID: 12736315
[TBL] [Abstract][Full Text] [Related]
11. A-Tract bending: insights into experimental structures by computational models.
Strahs D; Schlick T
J Mol Biol; 2000 Aug; 301(3):643-63. PubMed ID: 10966775
[TBL] [Abstract][Full Text] [Related]
12. The effects of sequence context on DNA curvature.
Dlakić M; Harrington RE
Proc Natl Acad Sci U S A; 1996 Apr; 93(9):3847-52. PubMed ID: 8632978
[TBL] [Abstract][Full Text] [Related]
13. Influence of fluctuations on DNA curvature. A comparison of flexible and static wedge models of intrinsically bent DNA.
Olson WK; Marky NL; Jernigan RL; Zhurkin VB
J Mol Biol; 1993 Jul; 232(2):530-54. PubMed ID: 8345522
[TBL] [Abstract][Full Text] [Related]
14. Persistence analysis of the static and dynamical helix deformations of DNA oligonucleotides: application to the crystal structure and molecular dynamics simulation of d(CGCGAATTCGCG)2.
Prévost C; Louise-May S; Ravishanker G; Lavery R; Beveridge DL
Biopolymers; 1993 Mar; 33(3):335-50. PubMed ID: 8461448
[TBL] [Abstract][Full Text] [Related]
15. Unconventional helical phasing of repetitive DNA motifs reveals their relative bending contributions.
Dlakic M; Harrington RE
Nucleic Acids Res; 1998 Sep; 26(18):4274-9. PubMed ID: 9722649
[TBL] [Abstract][Full Text] [Related]
16. A single 2'-hydroxyl group converts B-DNA to A-DNA. Crystal structure of the DNA-RNA chimeric decamer duplex d(CCGGC)r(G)d(CCGG) with a novel intermolecular G-C base-paired quadruplet.
Ban C; Ramakrishnan B; Sundaralingam M
J Mol Biol; 1994 Feb; 236(1):275-85. PubMed ID: 7508984
[TBL] [Abstract][Full Text] [Related]
17. Local variability and base sequence effects in DNA crystal structures.
Bhattacharyya D; Bansal M
J Biomol Struct Dyn; 1990 Dec; 8(3):539-72. PubMed ID: 2100518
[TBL] [Abstract][Full Text] [Related]
18. Sequence elements responsible for DNA curvature.
Haran TE; Kahn JD; Crothers DM
J Mol Biol; 1994 Nov; 244(2):135-43. PubMed ID: 7966325
[TBL] [Abstract][Full Text] [Related]
19. Molecular dynamics studies of sequence-directed curvature in bending locus of trypanosome kinetoplast DNA.
Mazur AK
J Biomol Struct Dyn; 2001 Jun; 18(6):832-43. PubMed ID: 11444372
[TBL] [Abstract][Full Text] [Related]
20. (+)-CC-1065 as a probe for intrinsic and protein-induced bending of DNA.
Hurley LH; Sun D
J Mol Recognit; 1994 Jun; 7(2):123-32. PubMed ID: 7826672
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]