182 related articles for article (PubMed ID: 11258875)
1. Identification of hydrogen bonds between Escherichia coli DNA polymerase I (Klenow fragment) and the minor groove of DNA by amino acid substitution of the polymerase and atomic substitution of the DNA.
Spratt TE
Biochemistry; 2001 Mar; 40(9):2647-52. PubMed ID: 11258875
[TBL] [Abstract][Full Text] [Related]
2. Escherichia coli DNA polymerase I (Klenow fragment) uses a hydrogen-bonding fork from Arg668 to the primer terminus and incoming deoxynucleotide triphosphate to catalyze DNA replication.
Meyer AS; Blandino M; Spratt TE
J Biol Chem; 2004 Aug; 279(32):33043-6. PubMed ID: 15210707
[TBL] [Abstract][Full Text] [Related]
3. Fidelity of mispair formation and mispair extension is dependent on the interaction between the minor groove of the primer terminus and Arg668 of DNA polymerase I of Escherichia coli.
McCain MD; Meyer AS; Schultz SS; Glekas A; Spratt TE
Biochemistry; 2005 Apr; 44(15):5647-59. PubMed ID: 15823023
[TBL] [Abstract][Full Text] [Related]
4. DNA polymerase catalysis in the absence of Watson-Crick hydrogen bonds: analysis by single-turnover kinetics.
Potapova O; Chan C; DeLucia AM; Helquist SA; Kool ET; Grindley ND; Joyce CM
Biochemistry; 2006 Jan; 45(3):890-8. PubMed ID: 16411765
[TBL] [Abstract][Full Text] [Related]
5. Loss of DNA minor groove interactions by exonuclease-deficient Klenow polymerase inhibits O6-methylguanine and abasic site translesion synthesis.
Gestl EE; Eckert KA
Biochemistry; 2005 May; 44(18):7059-68. PubMed ID: 15865450
[TBL] [Abstract][Full Text] [Related]
6. Functional hydrogen-bonding map of the minor groove binding tracks of six DNA polymerases.
Morales JC; Kool ET
Biochemistry; 2000 Oct; 39(42):12979-88. PubMed ID: 11041863
[TBL] [Abstract][Full Text] [Related]
7. Side chains that influence fidelity at the polymerase active site of Escherichia coli DNA polymerase I (Klenow fragment).
Minnick DT; Bebenek K; Osheroff WP; Turner RM; Astatke M; Liu L; Kunkel TA; Joyce CM
J Biol Chem; 1999 Jan; 274(5):3067-75. PubMed ID: 9915846
[TBL] [Abstract][Full Text] [Related]
8. Presence of 18-A long hydrogen bond track in the active site of Escherichia coli DNA polymerase I (Klenow fragment). Its requirement in the stabilization of enzyme-template-primer complex.
Singh K; Modak MJ
J Biol Chem; 2003 Mar; 278(13):11289-302. PubMed ID: 12522214
[TBL] [Abstract][Full Text] [Related]
9. Structure of purine-purine mispairs during misincorporation and extension by Escherichia coli DNA polymerase I.
Kretulskie AM; Spratt TE
Biochemistry; 2006 Mar; 45(11):3740-6. PubMed ID: 16533057
[TBL] [Abstract][Full Text] [Related]
10. Contribution of polar residues of the J-helix in the 3'-5' exonuclease activity of Escherichia coli DNA polymerase I (Klenow fragment): Q677 regulates the removal of terminal mismatch.
Singh K; Modak MJ
Biochemistry; 2005 Jun; 44(22):8101-10. PubMed ID: 15924429
[TBL] [Abstract][Full Text] [Related]
11. Interaction of DNA polymerase I (Klenow fragment) with DNA substrates containing extrahelical bases: implications for proofreading of frameshift errors during DNA synthesis.
Lam WC; Van der Schans EJ; Sowers LC; Millar DP
Biochemistry; 1999 Mar; 38(9):2661-8. PubMed ID: 10052936
[TBL] [Abstract][Full Text] [Related]
12. Enzyme-DNA interactions required for efficient nucleotide incorporation and discrimination in human DNA polymerase beta.
Beard WA; Osheroff WP; Prasad R; Sawaya MR; Jaju M; Wood TG; Kraut J; Kunkel TA; Wilson SH
J Biol Chem; 1996 May; 271(21):12141-4. PubMed ID: 8647805
[TBL] [Abstract][Full Text] [Related]
13. Active Site Interactions Impact Phosphoryl Transfer during Replication of Damaged and Undamaged DNA by Escherichia coli DNA Polymerase I.
Prakasha Gowda AS; Spratt TE
Chem Res Toxicol; 2017 Nov; 30(11):2033-2043. PubMed ID: 29053918
[TBL] [Abstract][Full Text] [Related]
14. Determinants of DNA mismatch recognition within the polymerase domain of the Klenow fragment.
Thompson EH; Bailey MF; van der Schans EJ; Joyce CM; Millar DP
Biochemistry; 2002 Jan; 41(3):713-22. PubMed ID: 11790092
[TBL] [Abstract][Full Text] [Related]
15. The effect of tautomeric constant on the specificity of nucleotide incorporation during DNA replication: support for the rare tautomer hypothesis of substitution mutagenesis.
Harris VH; Smith CL; Jonathan Cummins W; Hamilton AL; Adams H; Dickman M; Hornby DP; Williams DM
J Mol Biol; 2003 Mar; 326(5):1389-401. PubMed ID: 12595252
[TBL] [Abstract][Full Text] [Related]
16. DNA polymerase beta: pre-steady-state kinetic analysis and roles of arginine-283 in catalysis and fidelity.
Werneburg BG; Ahn J; Zhong X; Hondal RJ; Kraynov VS; Tsai MD
Biochemistry; 1996 Jun; 35(22):7041-50. PubMed ID: 8679529
[TBL] [Abstract][Full Text] [Related]
17. Probing minor groove hydrogen bonding interactions between RB69 DNA polymerase and DNA.
Xia S; Christian TD; Wang J; Konigsberg WH
Biochemistry; 2012 May; 51(21):4343-53. PubMed ID: 22571765
[TBL] [Abstract][Full Text] [Related]
18. DNA polymerase beta: structure-fidelity relationship from Pre-steady-state kinetic analyses of all possible correct and incorrect base pairs for wild type and R283A mutant.
Ahn J; Werneburg BG; Tsai MD
Biochemistry; 1997 Feb; 36(5):1100-7. PubMed ID: 9033400
[TBL] [Abstract][Full Text] [Related]
19. The fidelity of DNA synthesis catalyzed by derivatives of Escherichia coli DNA polymerase I.
Bebenek K; Joyce CM; Fitzgerald MP; Kunkel TA
J Biol Chem; 1990 Aug; 265(23):13878-87. PubMed ID: 2199444
[TBL] [Abstract][Full Text] [Related]
20. Identification of critical residues for the tight binding of both correct and incorrect nucleotides to human DNA polymerase λ.
Brown JA; Pack LR; Sherrer SM; Kshetry AK; Newmister SA; Fowler JD; Taylor JS; Suo Z
J Mol Biol; 2010 Nov; 403(4):505-15. PubMed ID: 20851705
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]