BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

93 related articles for article (PubMed ID: 11262932)

  • 1. Stress-induced DNA duplex destabilization in transcriptional initiation.
    Benham CJ
    Pac Symp Biocomput; 2001; ():103-14. PubMed ID: 11262932
    [TBL] [Abstract][Full Text] [Related]  

  • 2. The analysis of stress-induced duplex destabilization in long genomic DNA sequences.
    Benham CJ; Bi C
    J Comput Biol; 2004; 11(4):519-43. PubMed ID: 15579230
    [TBL] [Abstract][Full Text] [Related]  

  • 3. Duplex destabilization in superhelical DNA is predicted to occur at specific transcriptional regulatory regions.
    Benham CJ
    J Mol Biol; 1996 Jan; 255(3):425-34. PubMed ID: 8568887
    [TBL] [Abstract][Full Text] [Related]  

  • 4. WebSIDD: server for predicting stress-induced duplex destabilized (SIDD) sites in superhelical DNA.
    Bi C; Benham CJ
    Bioinformatics; 2004 Jun; 20(9):1477-9. PubMed ID: 15130924
    [TBL] [Abstract][Full Text] [Related]  

  • 5. SIDDBASE: a database containing the stress-induced DNA duplex destabilization (SIDD) profiles of complete microbial genomes.
    Wang H; Kaloper M; Benham CJ
    Nucleic Acids Res; 2006 Jan; 34(Database issue):D373-8. PubMed ID: 16381890
    [TBL] [Abstract][Full Text] [Related]  

  • 6. The positive aspects of stress: strain initiates domain decondensation (SIDD).
    Winkelmann S; Klar M; Benham C; Prashanth A; Goetze S; Gluch A; Bode J
    Brief Funct Genomic Proteomic; 2006 Mar; 5(1):24-31. PubMed ID: 16769674
    [TBL] [Abstract][Full Text] [Related]  

  • 7. Multiple collagen I gene regulatory elements have sites of stress-induced DNA duplex destabilization and nuclear scaffold/matrix association potential.
    Mielke C; Christensen MO; Westergaard O; Bode J; Benham CJ; Breindl M
    J Cell Biochem; 2002; 84(3):484-96. PubMed ID: 11813254
    [TBL] [Abstract][Full Text] [Related]  

  • 8. The effect of the DNA conformation on the rate of NtrC activated transcription of Escherichia coli RNA polymerase.sigma(54) holoenzyme.
    Schulz A; Langowski J; Rippe K
    J Mol Biol; 2000 Jul; 300(4):709-25. PubMed ID: 10891265
    [TBL] [Abstract][Full Text] [Related]  

  • 9. Activation of gene expression by a novel DNA structural transmission mechanism that requires supercoiling-induced DNA duplex destabilization in an upstream activating sequence.
    Sheridan SD; Benham CJ; Hatfield GW
    J Biol Chem; 1998 Aug; 273(33):21298-308. PubMed ID: 9694890
    [TBL] [Abstract][Full Text] [Related]  

  • 10. Activation of transcription initiation from a stable RNA promoter by a Fis protein-mediated DNA structural transmission mechanism.
    Opel ML; Aeling KA; Holmes WM; Johnson RC; Benham CJ; Hatfield GW
    Mol Microbiol; 2004 Jul; 53(2):665-74. PubMed ID: 15228542
    [TBL] [Abstract][Full Text] [Related]  

  • 11. A DNA structural atlas for Escherichia coli.
    Pedersen AG; Jensen LJ; Brunak S; Staerfeldt HH; Ussery DW
    J Mol Biol; 2000 Jun; 299(4):907-30. PubMed ID: 10843847
    [TBL] [Abstract][Full Text] [Related]  

  • 12. DNA supercoiling - a global transcriptional regulator for enterobacterial growth?
    Travers A; Muskhelishvili G
    Nat Rev Microbiol; 2005 Feb; 3(2):157-69. PubMed ID: 15685225
    [TBL] [Abstract][Full Text] [Related]  

  • 13. Growth inhibition mediated by excess negative supercoiling: the interplay between transcription elongation, R-loop formation and DNA topology.
    Drolet M
    Mol Microbiol; 2006 Feb; 59(3):723-30. PubMed ID: 16420346
    [TBL] [Abstract][Full Text] [Related]  

  • 14. Sites of predicted stress-induced DNA duplex destabilization occur preferentially at regulatory loci.
    Benham CJ
    Proc Natl Acad Sci U S A; 1993 Apr; 90(7):2999-3003. PubMed ID: 8385354
    [TBL] [Abstract][Full Text] [Related]  

  • 15. Hypermutable bases in the p53 cancer gene are at vulnerable positions in DNA secondary structures.
    Wright BE; Reimers JM; Schmidt KH; Reschke DK
    Cancer Res; 2002 Oct; 62(20):5641-4. PubMed ID: 12384517
    [TBL] [Abstract][Full Text] [Related]  

  • 16. Stress-induced duplex DNA destabilization in scaffold/matrix attachment regions.
    Benham C; Kohwi-Shigematsu T; Bode J
    J Mol Biol; 1997 Nov; 274(2):181-96. PubMed ID: 9398526
    [TBL] [Abstract][Full Text] [Related]  

  • 17. Stress-induced DNA duplex destabilization (SIDD) in the E. coli genome: SIDD sites are closely associated with promoters.
    Wang H; Noordewier M; Benham CJ
    Genome Res; 2004 Aug; 14(8):1575-84. PubMed ID: 15289476
    [TBL] [Abstract][Full Text] [Related]  

  • 18. Correlations between scaffold/matrix attachment region (S/MAR) binding activity and DNA duplex destabilization energy.
    Bode J; Winkelmann S; Götze S; Spiker S; Tsutsui K; Bi C; A K P; Benham C
    J Mol Biol; 2006 Apr; 358(2):597-613. PubMed ID: 16516920
    [TBL] [Abstract][Full Text] [Related]  

  • 19. Superhelical destabilization in regulatory regions of stress response genes.
    Wang H; Benham CJ
    PLoS Comput Biol; 2008 Jan; 4(1):e17. PubMed ID: 18208321
    [TBL] [Abstract][Full Text] [Related]  

  • 20. Brownian dynamics simulations of sequence-dependent duplex denaturation in dynamically superhelical DNA.
    Mielke SP; Grønbech-Jensen N; Krishnan VV; Fink WH; Benham CJ
    J Chem Phys; 2005 Sep; 123(12):124911. PubMed ID: 16392531
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 5.