These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.


BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

110 related articles for article (PubMed ID: 11262975)

  • 21. Solving large scale phylogenetic problems using DCM2.
    Huson DH; Vawter L; Warnow TJ
    Proc Int Conf Intell Syst Mol Biol; 1999; ():118-29. PubMed ID: 10786294
    [TBL] [Abstract][Full Text] [Related]  

  • 22. PartitionFinder 2: New Methods for Selecting Partitioned Models of Evolution for Molecular and Morphological Phylogenetic Analyses.
    Lanfear R; Frandsen PB; Wright AM; Senfeld T; Calcott B
    Mol Biol Evol; 2017 Mar; 34(3):772-773. PubMed ID: 28013191
    [TBL] [Abstract][Full Text] [Related]  

  • 23. PQ, a new program for phylogeny reconstruction.
    Penzar D; Krivozubov M; Spirin S
    BMC Bioinformatics; 2018 Oct; 19(1):374. PubMed ID: 30314446
    [TBL] [Abstract][Full Text] [Related]  

  • 24. Using median sets for inferring phylogenetic trees.
    Bernt M; Merkle D; Middendorf M
    Bioinformatics; 2007 Jan; 23(2):e129-35. PubMed ID: 17237080
    [TBL] [Abstract][Full Text] [Related]  

  • 25. Using jackknife to assess the quality of gene order phylogenies.
    Shi J; Zhang Y; Luo H; Tang J
    BMC Bioinformatics; 2010 Apr; 11():168. PubMed ID: 20370914
    [TBL] [Abstract][Full Text] [Related]  

  • 26. PhyInformR: phylogenetic experimental design and phylogenomic data exploration in R.
    Dornburg A; Fisk JN; Tamagnan J; Townsend JP
    BMC Evol Biol; 2016 Dec; 16(1):262. PubMed ID: 27905871
    [TBL] [Abstract][Full Text] [Related]  

  • 27. Benchmarking of de novo assembly algorithms for Nanopore data reveals optimal performance of OLC approaches.
    Cherukuri Y; Janga SC
    BMC Genomics; 2016 Aug; 17 Suppl 7(Suppl 7):507. PubMed ID: 27556636
    [TBL] [Abstract][Full Text] [Related]  

  • 28. RNA structural alignments, part I: Sankoff-based approaches for structural alignments.
    Havgaard JH; Gorodkin J
    Methods Mol Biol; 2014; 1097():275-90. PubMed ID: 24639164
    [TBL] [Abstract][Full Text] [Related]  

  • 29. Efficiently computing the Robinson-Foulds metric.
    Pattengale ND; Gottlieb EJ; Moret BM
    J Comput Biol; 2007; 14(6):724-35. PubMed ID: 17691890
    [TBL] [Abstract][Full Text] [Related]  

  • 30. Inference of species phylogenies from bi-allelic markers using pseudo-likelihood.
    Zhu J; Nakhleh L
    Bioinformatics; 2018 Jul; 34(13):i376-i385. PubMed ID: 29950004
    [TBL] [Abstract][Full Text] [Related]  

  • 31. Algorithms for multiple genome rearrangement by signed reversals.
    Wu S; Gu X
    Pac Symp Biocomput; 2003; ():363-74. PubMed ID: 12603042
    [TBL] [Abstract][Full Text] [Related]  

  • 32. VCFtoTree: a user-friendly tool to construct locus-specific alignments and phylogenies from thousands of anthropologically relevant genome sequences.
    Xu D; Jaber Y; Pavlidis P; Gokcumen O
    BMC Bioinformatics; 2017 Sep; 18(1):426. PubMed ID: 28950836
    [TBL] [Abstract][Full Text] [Related]  

  • 33. Deconvolution and phylogeny inference of structural variations in tumor genomic samples.
    Eaton J; Wang J; Schwartz R
    Bioinformatics; 2018 Jul; 34(13):i357-i365. PubMed ID: 29950001
    [TBL] [Abstract][Full Text] [Related]  

  • 34. Divide-and-conquer approach for the exemplar breakpoint distance.
    Nguyen CT; Tay YC; Zhang L
    Bioinformatics; 2005 May; 21(10):2171-6. PubMed ID: 15713729
    [TBL] [Abstract][Full Text] [Related]  

  • 35. Multiple genome rearrangement and breakpoint phylogeny.
    Sankoff D; Blanchette M
    J Comput Biol; 1998; 5(3):555-70. PubMed ID: 9773350
    [TBL] [Abstract][Full Text] [Related]  

  • 36. MulRF: a software package for phylogenetic analysis using multi-copy gene trees.
    Chaudhary R; Fernández-Baca D; Burleigh JG
    Bioinformatics; 2015 Feb; 31(3):432-3. PubMed ID: 25273112
    [TBL] [Abstract][Full Text] [Related]  

  • 37. Fast ancestral gene order reconstruction of genomes with unequal gene content.
    Feijão P; Araujo E
    BMC Bioinformatics; 2016 Nov; 17(Suppl 14):413. PubMed ID: 28185578
    [TBL] [Abstract][Full Text] [Related]  

  • 38. RibAlign: a software tool and database for eubacterial phylogeny based on concatenated ribosomal protein subunits.
    Teeling H; Gloeckner FO
    BMC Bioinformatics; 2006 Feb; 7():66. PubMed ID: 16476165
    [TBL] [Abstract][Full Text] [Related]  

  • 39. Gene maps linearization using genomic rearrangement distances.
    Blin G; Blais E; Hermelin D; Guillon P; Blanchette M; El-Mabrouk N
    J Comput Biol; 2007 May; 14(4):394-407. PubMed ID: 17572019
    [TBL] [Abstract][Full Text] [Related]  

  • 40. fastDNAmL: a tool for construction of phylogenetic trees of DNA sequences using maximum likelihood.
    Olsen GJ; Matsuda H; Hagstrom R; Overbeek R
    Comput Appl Biosci; 1994 Feb; 10(1):41-8. PubMed ID: 8193955
    [TBL] [Abstract][Full Text] [Related]  

    [Previous]   [Next]    [New Search]
    of 6.