99 related articles for article (PubMed ID: 11301303)
1. NIFAS: visual analysis of domain evolution in proteins.
Storm CE; Sonnhammer EL
Bioinformatics; 2001 Apr; 17(4):343-8. PubMed ID: 11301303
[TBL] [Abstract][Full Text] [Related]
2. TreeDom: a graphical web tool for analysing domain architecture evolution.
Haider C; Kavic M; Sonnhammer EL
Bioinformatics; 2016 Aug; 32(15):2384-5. PubMed ID: 27153675
[TBL] [Abstract][Full Text] [Related]
3. PfamAlyzer: domain-centric homology search.
Hollich V; Sonnhammer EL
Bioinformatics; 2007 Dec; 23(24):3382-3. PubMed ID: 17977882
[TBL] [Abstract][Full Text] [Related]
4. The Pfam protein families database.
Bateman A; Birney E; Cerruti L; Durbin R; Etwiller L; Eddy SR; Griffiths-Jones S; Howe KL; Marshall M; Sonnhammer EL
Nucleic Acids Res; 2002 Jan; 30(1):276-80. PubMed ID: 11752314
[TBL] [Abstract][Full Text] [Related]
5. Comprehensive analysis of orthologous protein domains using the HOPS database.
Storm CE; Sonnhammer EL
Genome Res; 2003 Oct; 13(10):2353-62. PubMed ID: 14525933
[TBL] [Abstract][Full Text] [Related]
6. Pfam: clans, web tools and services.
Finn RD; Mistry J; Schuster-Böckler B; Griffiths-Jones S; Hollich V; Lassmann T; Moxon S; Marshall M; Khanna A; Durbin R; Eddy SR; Sonnhammer EL; Bateman A
Nucleic Acids Res; 2006 Jan; 34(Database issue):D247-51. PubMed ID: 16381856
[TBL] [Abstract][Full Text] [Related]
7. REvolver: modeling sequence evolution under domain constraints.
Koestler T; von Haeseler A; Ebersberger I
Mol Biol Evol; 2012 Sep; 29(9):2133-45. PubMed ID: 22383532
[TBL] [Abstract][Full Text] [Related]
8. The Pfam protein families database.
Bateman A; Coin L; Durbin R; Finn RD; Hollich V; Griffiths-Jones S; Khanna A; Marshall M; Moxon S; Sonnhammer EL; Studholme DJ; Yeats C; Eddy SR
Nucleic Acids Res; 2004 Jan; 32(Database issue):D138-41. PubMed ID: 14681378
[TBL] [Abstract][Full Text] [Related]
9. TreeDomViewer: a tool for the visualization of phylogeny and protein domain structure.
Alako BT; Rainey D; Nijveen H; Leunissen JA
Nucleic Acids Res; 2006 Jul; 34(Web Server issue):W104-9. PubMed ID: 16844970
[TBL] [Abstract][Full Text] [Related]
10. PhyloDome--visualization of taxonomic distributions of domains occurring in eukaryote protein sequence sets.
Novatchkova M; Wildpaner M; Schweizer D; Eisenhaber F
Nucleic Acids Res; 2005 Jul; 33(Web Server issue):W121-5. PubMed ID: 15980439
[TBL] [Abstract][Full Text] [Related]
11. Using CLUSTAL for multiple sequence alignments.
Higgins DG; Thompson JD; Gibson TJ
Methods Enzymol; 1996; 266():383-402. PubMed ID: 8743695
[TBL] [Abstract][Full Text] [Related]
12. Automated Improvement of Domain ANnotations using context analysis of domain arrangements (AIDAN).
Beaussart F; Weiner J; Bornberg-Bauer E
Bioinformatics; 2007 Jul; 23(14):1834-6. PubMed ID: 17483506
[TBL] [Abstract][Full Text] [Related]
13. Pfam 3.1: 1313 multiple alignments and profile HMMs match the majority of proteins.
Bateman A; Birney E; Durbin R; Eddy SR; Finn RD; Sonnhammer EL
Nucleic Acids Res; 1999 Jan; 27(1):260-2. PubMed ID: 9847196
[TBL] [Abstract][Full Text] [Related]
14. Quantification of the elevated rate of domain rearrangements in metazoa.
Ekman D; Björklund AK; Elofsson A
J Mol Biol; 2007 Oct; 372(5):1337-48. PubMed ID: 17689563
[TBL] [Abstract][Full Text] [Related]
15. SNP@Domain: a web resource of single nucleotide polymorphisms (SNPs) within protein domain structures and sequences.
Han A; Kang HJ; Cho Y; Lee S; Kim YJ; Gong S
Nucleic Acids Res; 2006 Jul; 34(Web Server issue):W642-4. PubMed ID: 16845090
[TBL] [Abstract][Full Text] [Related]
16. ArchSchema: a tool for interactive graphing of related Pfam domain architectures.
Tamuri AU; Laskowski RA
Bioinformatics; 2010 May; 26(9):1260-1. PubMed ID: 20299327
[TBL] [Abstract][Full Text] [Related]
17. EVEREST: a collection of evolutionary conserved protein domains.
Portugaly E; Linial N; Linial M
Nucleic Acids Res; 2007 Jan; 35(Database issue):D241-6. PubMed ID: 17099230
[TBL] [Abstract][Full Text] [Related]
18. PIRSF: family classification system at the Protein Information Resource.
Wu CH; Nikolskaya A; Huang H; Yeh LS; Natale DA; Vinayaka CR; Hu ZZ; Mazumder R; Kumar S; Kourtesis P; Ledley RS; Suzek BE; Arminski L; Chen Y; Zhang J; Cardenas JL; Chung S; Castro-Alvear J; Dinkov G; Barker WC
Nucleic Acids Res; 2004 Jan; 32(Database issue):D112-4. PubMed ID: 14681371
[TBL] [Abstract][Full Text] [Related]
19. Domain tree-based analysis of protein architecture evolution.
Forslund K; Henricson A; Hollich V; Sonnhammer EL
Mol Biol Evol; 2008 Feb; 25(2):254-64. PubMed ID: 18025066
[TBL] [Abstract][Full Text] [Related]
20. Improvements to CluSTr: the database of SWISS-PROT+TrEMBL protein clusters.
Kriventseva EV; Servant F; Apweiler R
Nucleic Acids Res; 2003 Jan; 31(1):388-9. PubMed ID: 12520029
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]
