179 related articles for article (PubMed ID: 11352575)
1. Prokaryotic DNA polymerase I: evolution, structure, and "base flipping" mechanism for nucleotide selection.
Patel PH; Suzuki M; Adman E; Shinkai A; Loeb LA
J Mol Biol; 2001 May; 308(5):823-37. PubMed ID: 11352575
[TBL] [Abstract][Full Text] [Related]
2. DNA polymerase beta: pre-steady-state kinetic analysis and roles of arginine-283 in catalysis and fidelity.
Werneburg BG; Ahn J; Zhong X; Hondal RJ; Kraynov VS; Tsai MD
Biochemistry; 1996 Jun; 35(22):7041-50. PubMed ID: 8679529
[TBL] [Abstract][Full Text] [Related]
3. Snapshots of a Y-family DNA polymerase in replication: substrate-induced conformational transitions and implications for fidelity of Dpo4.
Wong JH; Fiala KA; Suo Z; Ling H
J Mol Biol; 2008 May; 379(2):317-30. PubMed ID: 18448122
[TBL] [Abstract][Full Text] [Related]
4. Visualizing DNA replication in a catalytically active Bacillus DNA polymerase crystal.
Kiefer JR; Mao C; Braman JC; Beese LS
Nature; 1998 Jan; 391(6664):304-7. PubMed ID: 9440698
[TBL] [Abstract][Full Text] [Related]
5. Crystal structures of human DNA polymerase beta complexed with gapped and nicked DNA: evidence for an induced fit mechanism.
Sawaya MR; Prasad R; Wilson SH; Kraut J; Pelletier H
Biochemistry; 1997 Sep; 36(37):11205-15. PubMed ID: 9287163
[TBL] [Abstract][Full Text] [Related]
6. Fingers-closing and other rapid conformational changes in DNA polymerase I (Klenow fragment) and their role in nucleotide selectivity.
Joyce CM; Potapova O; Delucia AM; Huang X; Basu VP; Grindley ND
Biochemistry; 2008 Jun; 47(23):6103-16. PubMed ID: 18473481
[TBL] [Abstract][Full Text] [Related]
7. Conformational changes during normal and error-prone incorporation of nucleotides by a Y-family DNA polymerase detected by 2-aminopurine fluorescence.
DeLucia AM; Grindley ND; Joyce CM
Biochemistry; 2007 Sep; 46(38):10790-803. PubMed ID: 17725324
[TBL] [Abstract][Full Text] [Related]
8. Homology modeling of four Y-family, lesion-bypass DNA polymerases: the case that E. coli Pol IV and human Pol kappa are orthologs, and E. coli Pol V and human Pol eta are orthologs.
Lee CH; Chandani S; Loechler EL
J Mol Graph Model; 2006 Sep; 25(1):87-102. PubMed ID: 16386932
[TBL] [Abstract][Full Text] [Related]
9. Use of 2-aminopurine fluorescence to examine conformational changes during nucleotide incorporation by DNA polymerase I (Klenow fragment).
Purohit V; Grindley ND; Joyce CM
Biochemistry; 2003 Sep; 42(34):10200-11. PubMed ID: 12939148
[TBL] [Abstract][Full Text] [Related]
10. Altering DNA polymerase incorporation fidelity by distorting the dNTP binding pocket with a bulky carcinogen-damaged template.
Yan SF; Wu M; Geacintov NE; Broyde S
Biochemistry; 2004 Jun; 43(24):7750-65. PubMed ID: 15196018
[TBL] [Abstract][Full Text] [Related]
11. Mutability of DNA polymerase I: implications for the creation of mutant DNA polymerases.
Loh E; Loeb LA
DNA Repair (Amst); 2005 Dec; 4(12):1390-8. PubMed ID: 16230053
[TBL] [Abstract][Full Text] [Related]
12. Structure of purine-purine mispairs during misincorporation and extension by Escherichia coli DNA polymerase I.
Kretulskie AM; Spratt TE
Biochemistry; 2006 Mar; 45(11):3740-6. PubMed ID: 16533057
[TBL] [Abstract][Full Text] [Related]
13. DNA polymerase beta: multiple conformational changes in the mechanism of catalysis.
Zhong X; Patel SS; Werneburg BG; Tsai MD
Biochemistry; 1997 Sep; 36(39):11891-900. PubMed ID: 9305982
[TBL] [Abstract][Full Text] [Related]
14. Facile polymerization of dNTPs bearing unnatural base analogues by DNA polymerase alpha and Klenow fragment (DNA polymerase I).
Chiaramonte M; Moore CL; Kincaid K; Kuchta RD
Biochemistry; 2003 Sep; 42(35):10472-81. PubMed ID: 12950174
[TBL] [Abstract][Full Text] [Related]
15. Varying DNA base-pair size in subangstrom increments: evidence for a loose, not large, active site in low-fidelity Dpo4 polymerase.
Mizukami S; Kim TW; Helquist SA; Kool ET
Biochemistry; 2006 Mar; 45(9):2772-8. PubMed ID: 16503632
[TBL] [Abstract][Full Text] [Related]
16. Solution structure of a viral DNA repair polymerase.
Maciejewski MW; Shin R; Pan B; Marintchev A; Denninger A; Mullen MA; Chen K; Gryk MR; Mullen GP
Nat Struct Biol; 2001 Nov; 8(11):936-41. PubMed ID: 11685238
[TBL] [Abstract][Full Text] [Related]
17. Mechanistic insights into replication across from bulky DNA adducts: a mutant polymerase I allows an N-acetyl-2-aminofluorene adduct to be accommodated during DNA synthesis.
Lone S; Romano LJ
Biochemistry; 2003 Apr; 42(13):3826-34. PubMed ID: 12667073
[TBL] [Abstract][Full Text] [Related]
18. Processive DNA synthesis observed in a polymerase crystal suggests a mechanism for the prevention of frameshift mutations.
Johnson SJ; Taylor JS; Beese LS
Proc Natl Acad Sci U S A; 2003 Apr; 100(7):3895-900. PubMed ID: 12649320
[TBL] [Abstract][Full Text] [Related]
19. Phe 771 of Escherichia coli DNA polymerase I (Klenow fragment) is the major site for the interaction with the template overhang and the stabilization of the pre-polymerase ternary complex.
Srivastava A; Singh K; Modak MJ
Biochemistry; 2003 Apr; 42(13):3645-54. PubMed ID: 12667054
[TBL] [Abstract][Full Text] [Related]
20. Evidence for Watson-Crick and not Hoogsteen or wobble base pairing in the selection of nucleotides for insertion opposite pyrimidines and a thymine dimer by yeast DNA pol eta.
Hwang H; Taylor JS
Biochemistry; 2005 Mar; 44(12):4850-60. PubMed ID: 15779911
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]
