117 related articles for article (PubMed ID: 11378466)
1. Database-assisted promoter analysis.
Hehl R; Wingender E
Trends Plant Sci; 2001 Jun; 6(6):251-5. PubMed ID: 11378466
[TBL] [Abstract][Full Text] [Related]
2. Expanding the TRANSFAC database towards an expert system of regulatory molecular mechanisms.
Heinemeyer T; Chen X; Karas H; Kel AE; Kel OV; Liebich I; Meinhardt T; Reuter I; Schacherer F; Wingender E
Nucleic Acids Res; 1999 Jan; 27(1):318-22. PubMed ID: 9847216
[TBL] [Abstract][Full Text] [Related]
3. PlantCARE, a plant cis-acting regulatory element database.
Rombauts S; Déhais P; Van Montagu M; Rouzé P
Nucleic Acids Res; 1999 Jan; 27(1):295-6. PubMed ID: 9847207
[TBL] [Abstract][Full Text] [Related]
4. AGRIS: Arabidopsis gene regulatory information server, an information resource of Arabidopsis cis-regulatory elements and transcription factors.
Davuluri RV; Sun H; Palaniswamy SK; Matthews N; Molina C; Kurtz M; Grotewold E
BMC Bioinformatics; 2003 Jun; 4():25. PubMed ID: 12820902
[TBL] [Abstract][Full Text] [Related]
5. PlantPAN: Plant promoter analysis navigator, for identifying combinatorial cis-regulatory elements with distance constraint in plant gene groups.
Chang WC; Lee TY; Huang HD; Huang HY; Pan RL
BMC Genomics; 2008 Nov; 9():561. PubMed ID: 19036138
[TBL] [Abstract][Full Text] [Related]
6. The TRANSFAC system on gene expression regulation.
Wingender E; Chen X; Fricke E; Geffers R; Hehl R; Liebich I; Krull M; Matys V; Michael H; Ohnhäuser R; Prüss M; Schacherer F; Thiele S; Urbach S
Nucleic Acids Res; 2001 Jan; 29(1):281-3. PubMed ID: 11125113
[TBL] [Abstract][Full Text] [Related]
7. The YEASTRACT database: a tool for the analysis of transcription regulatory associations in Saccharomyces cerevisiae.
Teixeira MC; Monteiro P; Jain P; Tenreiro S; Fernandes AR; Mira NP; Alenquer M; Freitas AT; Oliveira AL; Sá-Correia I
Nucleic Acids Res; 2006 Jan; 34(Database issue):D446-51. PubMed ID: 16381908
[TBL] [Abstract][Full Text] [Related]
8. Databases on transcriptional regulation: TRANSFAC, TRRD and COMPEL.
Heinemeyer T; Wingender E; Reuter I; Hermjakob H; Kel AE; Kel OV; Ignatieva EV; Ananko EA; Podkolodnaya OA; Kolpakov FA; Podkolodny NL; Kolchanov NA
Nucleic Acids Res; 1998 Jan; 26(1):362-7. PubMed ID: 9399875
[TBL] [Abstract][Full Text] [Related]
9. FOOTER: a web tool for finding mammalian DNA regulatory regions using phylogenetic footprinting.
Corcoran DL; Feingold E; Benos PV
Nucleic Acids Res; 2005 Jul; 33(Web Server issue):W442-6. PubMed ID: 15980508
[TBL] [Abstract][Full Text] [Related]
10. TRANSFAC: an integrated system for gene expression regulation.
Wingender E; Chen X; Hehl R; Karas H; Liebich I; Matys V; Meinhardt T; Prüss M; Reuter I; Schacherer F
Nucleic Acids Res; 2000 Jan; 28(1):316-9. PubMed ID: 10592259
[TBL] [Abstract][Full Text] [Related]
11. PlantCARE, a database of plant cis-acting regulatory elements and a portal to tools for in silico analysis of promoter sequences.
Lescot M; Déhais P; Thijs G; Marchal K; Moreau Y; Van de Peer Y; Rouzé P; Rombauts S
Nucleic Acids Res; 2002 Jan; 30(1):325-7. PubMed ID: 11752327
[TBL] [Abstract][Full Text] [Related]
12. TRANSFAC: a database on transcription factors and their DNA binding sites.
Wingender E; Dietze P; Karas H; Knüppel R
Nucleic Acids Res; 1996 Jan; 24(1):238-41. PubMed ID: 8594589
[TBL] [Abstract][Full Text] [Related]
13. Transcription Regulatory Regions Database (TRRD):its status in 1999.
Kolchanov NA; Ananko EA; Podkolodnaya OA; Ignatieva EV; Stepanenko IL; Kel-Margoulis OV; Kel AE; Merkulova TI; Goryachkovskaya TN; Busygina TV; Kolpakov FA; Podkolodny NL; Naumochkin AN; Romashchenko AG
Nucleic Acids Res; 1999 Jan; 27(1):303-6. PubMed ID: 9847210
[TBL] [Abstract][Full Text] [Related]
14. Search for new binding sites for the transcriptional factor SF-1 by the SITECON method: experimental verification and analysis of regulatory regions of orthologous genes.
Ignat'eva EV; Klimova NV; Oshchepkov DY; Vasil'ev GV; Merkulova TI; Kolchanov NA
Dokl Biochem Biophys; 2007; 415():165-9. PubMed ID: 17933326
[No Abstract] [Full Text] [Related]
15. Computer tool FUNSITE for analysis of eukaryotic regulatory genomic sequences.
Kel AE; Kondrakhin YV; Kolpakov PhA ; Kel OV; Romashenko AG; Wingender E; Milanesi L; Kolchanov NA
Proc Int Conf Intell Syst Mol Biol; 1995; 3():197-205. PubMed ID: 7584437
[TBL] [Abstract][Full Text] [Related]
16. Athena: a resource for rapid visualization and systematic analysis of Arabidopsis promoter sequences.
O'Connor TR; Dyreson C; Wyrick JJ
Bioinformatics; 2005 Dec; 21(24):4411-3. PubMed ID: 16223790
[TBL] [Abstract][Full Text] [Related]
17. Design of Knowledge Bases for Plant Gene Regulatory Networks.
Mukundi E; Gomez-Cano F; Ouma WZ; Grotewold E
Methods Mol Biol; 2017; 1629():207-223. PubMed ID: 28623588
[TBL] [Abstract][Full Text] [Related]
18. PlnTFDB: an integrative plant transcription factor database.
Riaño-Pachón DM; Ruzicic S; Dreyer I; Mueller-Roeber B
BMC Bioinformatics; 2007 Feb; 8():42. PubMed ID: 17286856
[TBL] [Abstract][Full Text] [Related]
19. SiteSeer: Visualisation and analysis of transcription factor binding sites in nucleotide sequences.
Boardman PE; Oliver SG; Hubbard SJ
Nucleic Acids Res; 2003 Jul; 31(13):3572-5. PubMed ID: 12824368
[TBL] [Abstract][Full Text] [Related]
20. Integrated databases and computer systems for studying eukaryotic gene expression.
Kolchanov NA; Ponomarenko MP; Frolov AS; Ananko EA; Kolpakov FA; Ignatieva EV; Podkolodnaya OA; Goryachkovskaya TN; Stepanenko IL; Merkulova TI; Babenko VV; Ponomarenko YV; Kochetov AV; Podkolodny NL; Vorobiev DV; Lavryushev SV; Grigorovich DA; Kondrakhin YV; Milanesi L; Wingender E; Solovyev V; Overton GC
Bioinformatics; 1999; 15(7-8):669-86. PubMed ID: 10487874
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]
