BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

874 related articles for article (PubMed ID: 11444368)

  • 1. The first example of a Hoogsteen base-paired DNA duplex in dynamic equilibrium with a Watson-Crick base-paired duplex--a structural (NMR), kinetic and thermodynamic study.
    Isaksson J; Zamaratski E; Maltseva TV; Agback P; Kumar A; Chattopadhyaya J
    J Biomol Struct Dyn; 2001 Jun; 18(6):783-806. PubMed ID: 11444368
    [TBL] [Abstract][Full Text] [Related]  

  • 2. Thermodynamic, kinetic, and conformational properties of a parallel intermolecular DNA triplex containing 5' and 3' junctions.
    Asensio JL; Dosanjh HS; Jenkins TC; Lane AN
    Biochemistry; 1998 Oct; 37(43):15188-98. PubMed ID: 9790683
    [TBL] [Abstract][Full Text] [Related]  

  • 3. Molecular dynamics investigations of DNA triple helical models: unique features of the Watson-Crick duplex.
    Sekharudu CY; Yathindra N; Sundaralingam M
    J Biomol Struct Dyn; 1993 Oct; 11(2):225-44. PubMed ID: 8286053
    [TBL] [Abstract][Full Text] [Related]  

  • 4. Solution structures of aminofluorene [AF]-stacked conformers of the syn [AF]-C8-dG adduct positioned opposite dC or dA at a template-primer junction.
    Gu Z; Gorin A; Hingerty BE; Broyde S; Patel DJ
    Biochemistry; 1999 Aug; 38(33):10855-70. PubMed ID: 10451382
    [TBL] [Abstract][Full Text] [Related]  

  • 5. Effect of Watson-Crick and Hoogsteen base pairing on the conformational stability of C8-phenoxyl-2'-deoxyguanosine adducts.
    Millen AL; Churchill CD; Manderville RA; Wetmore SD
    J Phys Chem B; 2010 Oct; 114(40):12995-3004. PubMed ID: 20853889
    [TBL] [Abstract][Full Text] [Related]  

  • 6. Atomic structures of excited state A-T Hoogsteen base pairs in duplex DNA by combining NMR relaxation dispersion, mutagenesis, and chemical shift calculations.
    Shi H; Clay MC; Rangadurai A; Sathyamoorthy B; Case DA; Al-Hashimi HM
    J Biomol NMR; 2018 Apr; 70(4):229-244. PubMed ID: 29675775
    [TBL] [Abstract][Full Text] [Related]  

  • 7. Hydration of Watson-Crick base pairs and dehydration of Hoogsteen base pairs inducing structural polymorphism under molecular crowding conditions.
    Miyoshi D; Nakamura K; Tateishi-Karimata H; Ohmichi T; Sugimoto N
    J Am Chem Soc; 2009 Mar; 131(10):3522-31. PubMed ID: 19236045
    [TBL] [Abstract][Full Text] [Related]  

  • 8. A DNA hairpin with a single residue loop closed by a strongly distorted Watson-Crick G x C base-pair.
    El Amri C; Mauffret O; Monnot M; Tevanian G; Lescot E; Porumb H; Fermandjian S
    J Mol Biol; 1999 Nov; 294(2):427-42. PubMed ID: 10610769
    [TBL] [Abstract][Full Text] [Related]  

  • 9. pH and cation effects on the properties of parallel pyrimidine motif DNA triplexes.
    Sugimoto N; Wu P; Hara H; Kawamoto Y
    Biochemistry; 2001 Aug; 40(31):9396-405. PubMed ID: 11478909
    [TBL] [Abstract][Full Text] [Related]  

  • 10. Solution conformation of an intramolecular DNA triplex containing a nonnucleotide linker: comparison with the DNA duplex.
    Bartley JP; Brown T; Lane AN
    Biochemistry; 1997 Nov; 36(47):14502-11. PubMed ID: 9398169
    [TBL] [Abstract][Full Text] [Related]  

  • 11. NMR structural studies of the ionizing radiation adduct 7-hydro-8-oxodeoxyguanosine (8-oxo-7H-dG) opposite deoxyadenosine in a DNA duplex. 8-Oxo-7H-dG(syn).dA(anti) alignment at lesion site.
    Kouchakdjian M; Bodepudi V; Shibutani S; Eisenberg M; Johnson F; Grollman AP; Patel DJ
    Biochemistry; 1991 Feb; 30(5):1403-12. PubMed ID: 1991121
    [TBL] [Abstract][Full Text] [Related]  

  • 12. Evidence for a DNA triplex in a recombination-like motif: I. Recognition of Watson-Crick base pairs by natural bases in a high-stability triplex.
    Walter A; Schütz H; Simon H; Birch-Hirschfeld E
    J Mol Recognit; 2001; 14(2):122-39. PubMed ID: 11301482
    [TBL] [Abstract][Full Text] [Related]  

  • 13. Base-pair dynamics in an antiparallel DNA triplex measured by catalyzed imino proton exchange monitored via 1H NMR spectroscopy.
    Wärmländer S; Sandström K; Leijon M; Gräslund A
    Biochemistry; 2003 Nov; 42(43):12589-95. PubMed ID: 14580205
    [TBL] [Abstract][Full Text] [Related]  

  • 14. A single carbocyclic nucleotide substitution in a 12mer DNA gives a Hoogsteen basepaired duplex (till 38 degrees C) and a hairpin (till 65 degrees C). A 600 MHz NMR spectroscopic study.
    Isaksson J; Maltseva T; Agback P; Luo X; Kumar A; Zamaratski E; Chattopadhyaya J
    Nucleosides Nucleotides; 1999; 18(6-7):1593-6. PubMed ID: 10474237
    [TBL] [Abstract][Full Text] [Related]  

  • 15. Solution structure of a DNA double helix incorporating four consecutive non-Watson-Crick base-pairs.
    Chou SH; Chin KH
    J Mol Biol; 2001 Sep; 312(4):769-81. PubMed ID: 11575931
    [TBL] [Abstract][Full Text] [Related]  

  • 16. Solution conformation of the (-)-trans-anti-[BP]dG adduct opposite a deletion site in a DNA duplex: intercalation of the covalently attached benzo[a]pyrene into the helix with base displacement of the modified deoxyguanosine into the minor groove.
    Feng B; Gorin A; Kolbanovskiy A; Hingerty BE; Geacintov NE; Broyde S; Patel DJ
    Biochemistry; 1997 Nov; 36(45):13780-90. PubMed ID: 9374854
    [TBL] [Abstract][Full Text] [Related]  

  • 17. Solution conformation of the (-)-cis-anti-benzo[a]pyrenyl-dG adduct opposite dC in a DNA duplex: intercalation of the covalently attached BP ring into the helix with base displacement of the modified deoxyguanosine into the major groove.
    Cosman M; Hingerty BE; Luneva N; Amin S; Geacintov NE; Broyde S; Patel DJ
    Biochemistry; 1996 Jul; 35(30):9850-63. PubMed ID: 8703959
    [TBL] [Abstract][Full Text] [Related]  

  • 18. Solution structure of a trans-opened (10S)-dA adduct of (+)-(7S,8R,9S,10R)-7,8-dihydroxy-9,10-epoxy-7,8,9,10-tetrahydrobenzo[a]pyrene in a fully complementary DNA duplex: evidence for a major syn conformation.
    Pradhan P; Tirumala S; Liu X; Sayer JM; Jerina DM; Yeh HJ
    Biochemistry; 2001 May; 40(20):5870-81. PubMed ID: 11352722
    [TBL] [Abstract][Full Text] [Related]  

  • 19. alpha-L-LNA (alpha-L-ribo configured locked nucleic acid) recognition of DNA: an NMR spectroscopic study.
    Nielsen KM; Petersen M; Håkansson AE; Wengel J; Jacobsen JP
    Chemistry; 2002 Jul; 8(13):3001-9. PubMed ID: 12489231
    [TBL] [Abstract][Full Text] [Related]  

  • 20. Watson-Crick versus Hoogsteen Base Pairs: Chemical Strategy to Encode and Express Genetic Information in Life.
    Takahashi S; Sugimoto N
    Acc Chem Res; 2021 May; 54(9):2110-2120. PubMed ID: 33591181
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 44.