These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.


BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

83 related articles for article (PubMed ID: 11449568)

  • 1. H-BloX: visualizing alignment block entropies.
    Zuegge J; Ebeling M; Schneider G
    J Mol Graph Model; 2001; 19(3-4):304-6, 379. PubMed ID: 11449568
    [TBL] [Abstract][Full Text] [Related]  

  • 2. Sequence protein alignment with composition new evolutions (SPACne): a program for the identification of polypeptides using amino acid composition. A user friendly modification of SPAC.
    Gaillard S; Antonini F; Joly N; Gouze JN; Grillasca JP
    Cell Mol Biol (Noisy-le-grand); 2004 Nov; 50(7):801-3. PubMed ID: 15672463
    [TBL] [Abstract][Full Text] [Related]  

  • 3. Relative von Neumann entropy for evaluating amino acid conservation.
    Johansson F; Toh H
    J Bioinform Comput Biol; 2010 Oct; 8(5):809-23. PubMed ID: 20981889
    [TBL] [Abstract][Full Text] [Related]  

  • 4. Sequence alignment visualization in HTML5 without Java.
    Gille C; Birgit W; Gille A
    Bioinformatics; 2014 Jan; 30(1):121-2. PubMed ID: 24273246
    [TBL] [Abstract][Full Text] [Related]  

  • 5. Protein sequence entropy is closely related to packing density and hydrophobicity.
    Liao H; Yeh W; Chiang D; Jernigan RL; Lustig B
    Protein Eng Des Sel; 2005 Feb; 18(2):59-64. PubMed ID: 15788422
    [TBL] [Abstract][Full Text] [Related]  

  • 6. FeatureMap3D--a tool to map protein features and sequence conservation onto homologous structures in the PDB.
    Wernersson R; Rapacki K; Staerfeldt HH; Sackett PW; Mølgaard A
    Nucleic Acids Res; 2006 Jul; 34(Web Server issue):W84-8. PubMed ID: 16845115
    [TBL] [Abstract][Full Text] [Related]  

  • 7. The 3of5 web application for complex and comprehensive pattern matching in protein sequences.
    Seiler M; Mehrle A; Poustka A; Wiemann S
    BMC Bioinformatics; 2006 Mar; 7():144. PubMed ID: 16542452
    [TBL] [Abstract][Full Text] [Related]  

  • 8. ESPript: analysis of multiple sequence alignments in PostScript.
    Gouet P; Courcelle E; Stuart DI; Métoz F
    Bioinformatics; 1999 Apr; 15(4):305-8. PubMed ID: 10320398
    [TBL] [Abstract][Full Text] [Related]  

  • 9. PrediSi: prediction of signal peptides and their cleavage positions.
    Hiller K; Grote A; Scheer M; Münch R; Jahn D
    Nucleic Acids Res; 2004 Jul; 32(Web Server issue):W375-9. PubMed ID: 15215414
    [TBL] [Abstract][Full Text] [Related]  

  • 10. PRALINE: a multiple sequence alignment toolbox that integrates homology-extended and secondary structure information.
    Simossis VA; Heringa J
    Nucleic Acids Res; 2005 Jul; 33(Web Server issue):W289-94. PubMed ID: 15980472
    [TBL] [Abstract][Full Text] [Related]  

  • 11. Protein sequence alignments: a strategy for the hierarchical analysis of residue conservation.
    Livingstone CD; Barton GJ
    Comput Appl Biosci; 1993 Dec; 9(6):745-56. PubMed ID: 8143162
    [TBL] [Abstract][Full Text] [Related]  

  • 12. Match-Box_server: a multiple sequence alignment tool placing emphasis on reliability.
    Depiereux E; Baudoux G; Briffeuil P; Reginster I; De Bolle X; Vinals C; Feytmans E
    Comput Appl Biosci; 1997 Jun; 13(3):249-56. PubMed ID: 9183529
    [TBL] [Abstract][Full Text] [Related]  

  • 13. BAliBASE (Benchmark Alignment dataBASE): enhancements for repeats, transmembrane sequences and circular permutations.
    Bahr A; Thompson JD; Thierry JC; Poch O
    Nucleic Acids Res; 2001 Jan; 29(1):323-6. PubMed ID: 11125126
    [TBL] [Abstract][Full Text] [Related]  

  • 14. ConFind: a robust tool for conserved sequence identification.
    Smagala JA; Dawson ED; Mehlmann M; Townsend MB; Kuchta RD; Rowlen KL
    Bioinformatics; 2005 Dec; 21(24):4420-2. PubMed ID: 16239306
    [TBL] [Abstract][Full Text] [Related]  

  • 15. Incorporating background frequency improves entropy-based residue conservation measures.
    Wang K; Samudrala R
    BMC Bioinformatics; 2006 Aug; 7():385. PubMed ID: 16916457
    [TBL] [Abstract][Full Text] [Related]  

  • 16. PR2ALIGN: a stand-alone software program and a web-server for protein sequence alignment using weighted biochemical properties of amino acids.
    Kuznetsov IB; McDuffie M
    BMC Res Notes; 2015 May; 8():187. PubMed ID: 25947299
    [TBL] [Abstract][Full Text] [Related]  

  • 17. Protein Block Expert (PBE): a web-based protein structure analysis server using a structural alphabet.
    Tyagi M; Sharma P; Swamy CS; Cadet F; Srinivasan N; de Brevern AG; Offmann B
    Nucleic Acids Res; 2006 Jul; 34(Web Server issue):W119-23. PubMed ID: 16844973
    [TBL] [Abstract][Full Text] [Related]  

  • 18. Mutation Master: profiles of substitutions in hepatitis C virus RNA of the core, alternate reading frame, and NS2 coding regions.
    Walewski JL; Gutierrez JA; Branch-Elliman W; Stump DD; Keller TR; Rodriguez A; Benson G; Branch AD
    RNA; 2002 May; 8(5):557-71. PubMed ID: 12022223
    [TBL] [Abstract][Full Text] [Related]  

  • 19. Analysis of cleavage-site patterns in protein precursor sequences with a perceptron-type neural network.
    Schneider G; Röhlk S; Wrede P
    Biochem Biophys Res Commun; 1993 Jul; 194(2):951-9. PubMed ID: 8343174
    [TBL] [Abstract][Full Text] [Related]  

  • 20. BALCONY: an R package for MSA and functional compartments of protein variability analysis.
    Płuciennik A; Stolarczyk M; Bzówka M; Raczyńska A; Magdziarz T; Góra A
    BMC Bioinformatics; 2018 Aug; 19(1):300. PubMed ID: 30107777
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 5.