These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.
7. A systematic search for positive selection in higher plants (Embryophytes). Roth C; Liberles DA BMC Plant Biol; 2006 Jun; 6():12. PubMed ID: 16784532 [TBL] [Abstract][Full Text] [Related]
8. Nonsynonymous substitution rate (Ka) is a relatively consistent parameter for defining fast-evolving and slow-evolving protein-coding genes. Wang D; Liu F; Wang L; Huang S; Yu J Biol Direct; 2011 Feb; 6():13. PubMed ID: 21342519 [TBL] [Abstract][Full Text] [Related]
9. Reconstruction of ancestral protein sequences and its applications. Cai W; Pei J; Grishin NV BMC Evol Biol; 2004 Sep; 4():33. PubMed ID: 15377393 [TBL] [Abstract][Full Text] [Related]
10. Evolution of vertebrate genes related to prion and Shadoo proteins--clues from comparative genomic analysis. Premzl M; Gready JE; Jermiin LS; Simonic T; Marshall Graves JA Mol Biol Evol; 2004 Dec; 21(12):2210-31. PubMed ID: 15342797 [TBL] [Abstract][Full Text] [Related]
11. Detecting compensatory covariation signals in protein evolution using reconstructed ancestral sequences. Fukami-Kobayashi K; Schreiber DR; Benner SA J Mol Biol; 2002 Jun; 319(3):729-43. PubMed ID: 12054866 [TBL] [Abstract][Full Text] [Related]
12. MEGA5: molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods. Tamura K; Peterson D; Peterson N; Stecher G; Nei M; Kumar S Mol Biol Evol; 2011 Oct; 28(10):2731-9. PubMed ID: 21546353 [TBL] [Abstract][Full Text] [Related]
13. Bayesian coestimation of phylogeny and sequence alignment. Lunter G; Miklós I; Drummond A; Jensen JL; Hein J BMC Bioinformatics; 2005 Apr; 6():83. PubMed ID: 15804354 [TBL] [Abstract][Full Text] [Related]
14. Evaluation of six methods for estimating synonymous and nonsynonymous substitution rates. Zhang Z; Yu J Genomics Proteomics Bioinformatics; 2006 Aug; 4(3):173-81. PubMed ID: 17127215 [TBL] [Abstract][Full Text] [Related]
15. Exploring the relationship between sequence similarity and accurate phylogenetic trees. Cantarel BL; Morrison HG; Pearson W Mol Biol Evol; 2006 Nov; 23(11):2090-100. PubMed ID: 16891377 [TBL] [Abstract][Full Text] [Related]
16. Molecular evolution of the betagamma lens crystallin superfamily: evidence for a retained ancestral function in gamma N crystallins? Weadick CJ; Chang BS Mol Biol Evol; 2009 May; 26(5):1127-42. PubMed ID: 19233964 [TBL] [Abstract][Full Text] [Related]
17. Integrating protein structures and precomputed genealogies in the Magnum database: examples with cellular retinoid binding proteins. Bradley ME; Benner SA BMC Bioinformatics; 2006 Feb; 7():89. PubMed ID: 16504077 [TBL] [Abstract][Full Text] [Related]
18. A branch-and-bound algorithm for the inference of ancestral amino-acid sequences when the replacement rate varies among sites: Application to the evolution of five gene families. Pupko T; Pe'er I; Hasegawa M; Graur D; Friedman N Bioinformatics; 2002 Aug; 18(8):1116-23. PubMed ID: 12176835 [TBL] [Abstract][Full Text] [Related]