527 related articles for article (PubMed ID: 11565847)
1. Solution structure of the dodecamer d-(CATGGGCC-CATG)2 is B-DNA. Experimental and molecular dynamics study.
Dornberger U; Spackovj N; Walter A; Gollmick FA; Sponer J; Fritzsche H
J Biomol Struct Dyn; 2001 Aug; 19(1):159-74. PubMed ID: 11565847
[TBL] [Abstract][Full Text] [Related]
2. An FTIR and CD study of the structural effects of G-tract length and sequence context on DNA conformation in solution.
Lindqvist M; Gräslund A
J Mol Biol; 2001 Nov; 314(3):423-32. PubMed ID: 11846556
[TBL] [Abstract][Full Text] [Related]
3. An A-type double helix of DNA having B-type puckering of the deoxyribose rings.
Trantírek L; Stefl R; Vorlícková M; Koca J; Sklenár V; Kypr J
J Mol Biol; 2000 Apr; 297(4):907-22. PubMed ID: 10736226
[TBL] [Abstract][Full Text] [Related]
4. Investigation of solution structure of d(GAATTTAAATTC)2 by 1H NMR, molecular dynamics, mechanics, refinement by back-calculation of the NOESY spectrum and analysis of this structure using X-ray data.
Chuprina VP; Sletten E; Fedoroff OYu
J Biomol Struct Dyn; 1993 Feb; 10(4):693-707. PubMed ID: 8466674
[TBL] [Abstract][Full Text] [Related]
5. Thermal stability, structural features, and B-to-Z transition in DNA tetraloop hairpins as determined by optical spectroscopy in d(CG)(3)T(4)(CG)(3) and d(CG)(3)A(4)(CG)(3) oligodeoxynucleotides.
Hernández B; Baumruk V; Gouyette C; Ghomi M
Biopolymers; 2005 May; 78(1):21-34. PubMed ID: 15690428
[TBL] [Abstract][Full Text] [Related]
6. The solution conformation of a carbocyclic analog of the Dickerson-Drew dodecamer: comparison with its own X-ray structure and that of the NMR structure of the native counterpart.
Denisov AY; Zamaratski EV; Maltseva TV; Sandström A; Bekiroglu S; Altmann KH; Egli M; Chattopadhyaya J
J Biomol Struct Dyn; 1998 Dec; 16(3):547-68. PubMed ID: 10052613
[TBL] [Abstract][Full Text] [Related]
7. Solution structure of a DNA dodecamer containing the anti-neoplastic agent arabinosylcytosine: combined use of NMR, restrained molecular dynamics, and full relaxation matrix refinement.
Schweitzer BI; Mikita T; Kellogg GW; Gardner KH; Beardsley GP
Biochemistry; 1994 Sep; 33(38):11460-75. PubMed ID: 7918360
[TBL] [Abstract][Full Text] [Related]
8. Molecular dynamics simulations of B '-DNA: sequence effects on A-tract-induced bending and flexibility.
McConnell KJ; Beveridge DL
J Mol Biol; 2001 Nov; 314(1):23-40. PubMed ID: 11724529
[TBL] [Abstract][Full Text] [Related]
9. Solution conformation of the (-)-cis-anti-benzo[a]pyrenyl-dG adduct opposite dC in a DNA duplex: intercalation of the covalently attached BP ring into the helix with base displacement of the modified deoxyguanosine into the major groove.
Cosman M; Hingerty BE; Luneva N; Amin S; Geacintov NE; Broyde S; Patel DJ
Biochemistry; 1996 Jul; 35(30):9850-63. PubMed ID: 8703959
[TBL] [Abstract][Full Text] [Related]
10. NMR solution structure of the N3' --> P5' phosphoramidate duplex d(CGCGAATTCGCG)2 by the iterative relaxation matrix approach.
Ding D; Gryaznov SM; Wilson WD
Biochemistry; 1998 Sep; 37(35):12082-93. PubMed ID: 9724520
[TBL] [Abstract][Full Text] [Related]
11. Conformational analysis of a hybrid DNA-RNA double helical oligonucleotide in aqueous solution: d(CG)r(CG)d(CG) studied by 1D- and 2D-1H NMR spectroscopy.
Haasnoot CA; Westerink HP; van der Marel GA; van Boom JH
J Biomol Struct Dyn; 1983 Oct; 1(1):131-49. PubMed ID: 6086057
[TBL] [Abstract][Full Text] [Related]
12. Solution structure of an oligodeoxynucleotide duplex containing the exocyclic lesion 3,N4-etheno-2'-deoxycytidine opposite 2'-deoxyadenosine, determined by NMR spectroscopy and restrained molecular dynamics.
Korobka A; Cullinan D; Cosman M; Grollman AP; Patel DJ; Eisenberg M; de los Santos C
Biochemistry; 1996 Oct; 35(41):13310-8. PubMed ID: 8873597
[TBL] [Abstract][Full Text] [Related]
13. Solution structural study of a DNA duplex containing the guanine-N7 adduct formed by a cytotoxic platinum-acridine hybrid agent.
Baruah H; Wright MW; Bierbach U
Biochemistry; 2005 Apr; 44(16):6059-70. PubMed ID: 15835895
[TBL] [Abstract][Full Text] [Related]
14. Oxetane locked thymidine in the Dickerson-Drew dodecamer causes local base pairing distortions -- an NMR structure and hydration study.
Isaksson J; Plashkevych O; Pradeepkumar PI; Chatterjee S; Barman J; Pathmasiri W; Shrivastava P; Petit C; Chattopadhyaya J
J Biomol Struct Dyn; 2005 Dec; 23(3):299-330. PubMed ID: 16218756
[TBL] [Abstract][Full Text] [Related]
15. Molecular dynamics simulations of DNA curvature and flexibility: helix phasing and premelting.
Beveridge DL; Dixit SB; Barreiro G; Thayer KM
Biopolymers; 2004 Feb; 73(3):380-403. PubMed ID: 14755574
[TBL] [Abstract][Full Text] [Related]
16. Conformational distortion of sugar moieties in the RecA-bound DNA structure determined by a simulated annealing method.
Nishinaka T; Ito Y; Yokoyama S; Shibata T
Nucleic Acids Symp Ser; 1997; (37):269-70. PubMed ID: 9586103
[TBL] [Abstract][Full Text] [Related]
17. Structure of a DNA duplex that contains alpha-anomeric nucleotides and 3'-3' and 5'-5' phosphodiester linkages: coexistence of parallel and antiparallel DNA.
Aramini JM; Kalisch BW; Pon RT; van de Sande JH; Germann MW
Biochemistry; 1996 Jul; 35(29):9355-65. PubMed ID: 8755713
[TBL] [Abstract][Full Text] [Related]
18. NMR solution structure of an oligodeoxynucleotide duplex containing the exocyclic lesion 3,N4-etheno-2'-deoxycytidine opposite thymidine: comparison with the duplex containing deoxyadenosine opposite the adduct.
Cullinan D; Korobka A; Grollman AP; Patel DJ; Eisenberg M; de los Santos C
Biochemistry; 1996 Oct; 35(41):13319-27. PubMed ID: 8873598
[TBL] [Abstract][Full Text] [Related]
19. Molecular dynamics with weighted time-averaged restraints for a DNA octamer. Dynamic interpretation of nuclear magnetic resonance data.
Schmitz U; Ulyanov NB; Kumar A; James TL
J Mol Biol; 1993 Nov; 234(2):373-89. PubMed ID: 8230221
[TBL] [Abstract][Full Text] [Related]
20. Hairpin loops consisting of single adenine residues closed by sheared A.A and G.G pairs formed by the DNA triplets AAA and GAG: solution structure of the d(GTACAAAGTAC) hairpin.
Chou SH; Zhu L; Gao Z; Cheng JW; Reid BR
J Mol Biol; 1996 Dec; 264(5):981-1001. PubMed ID: 9000625
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]
