BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

342 related articles for article (PubMed ID: 11580256)

  • 1. The energetics of off-rotamer protein side-chain conformations.
    Petrella RJ; Karplus M
    J Mol Biol; 2001 Oct; 312(5):1161-75. PubMed ID: 11580256
    [TBL] [Abstract][Full Text] [Related]  

  • 2. The role of carbon-donor hydrogen bonds in stabilizing tryptophan conformations.
    Petrella RJ; Karplus M
    Proteins; 2004 Mar; 54(4):716-26. PubMed ID: 14997567
    [TBL] [Abstract][Full Text] [Related]  

  • 3. Rotamers: to be or not to be? An analysis of amino acid side-chain conformations in globular proteins.
    Schrauber H; Eisenhaber F; Argos P
    J Mol Biol; 1993 Mar; 230(2):592-612. PubMed ID: 8464066
    [TBL] [Abstract][Full Text] [Related]  

  • 4. Progress in protein-protein docking: atomic resolution predictions in the CAPRI experiment using RosettaDock with an improved treatment of side-chain flexibility.
    Schueler-Furman O; Wang C; Baker D
    Proteins; 2005 Aug; 60(2):187-94. PubMed ID: 15981249
    [TBL] [Abstract][Full Text] [Related]  

  • 5. Statistically based reduced representation of amino acid side chains.
    Rainey JK; Goh MC
    J Chem Inf Comput Sci; 2004; 44(3):817-30. PubMed ID: 15154746
    [TBL] [Abstract][Full Text] [Related]  

  • 6. Statistical and conformational analysis of the electron density of protein side chains.
    Shapovalov MV; Dunbrack RL
    Proteins; 2007 Feb; 66(2):279-303. PubMed ID: 17080462
    [TBL] [Abstract][Full Text] [Related]  

  • 7. Incorporating knowledge-based biases into an energy-based side-chain modeling method: application to comparative modeling of protein structure.
    Mendes J; Nagarajaram HA; Soares CM; Blundell TL; Carrondo MA
    Biopolymers; 2001 Aug; 59(2):72-86. PubMed ID: 11373721
    [TBL] [Abstract][Full Text] [Related]  

  • 8. Improved side-chain modeling for protein-protein docking.
    Wang C; Schueler-Furman O; Baker D
    Protein Sci; 2005 May; 14(5):1328-39. PubMed ID: 15802647
    [TBL] [Abstract][Full Text] [Related]  

  • 9. Extending the accuracy limits of prediction for side-chain conformations.
    Xiang Z; Honig B
    J Mol Biol; 2001 Aug; 311(2):421-30. PubMed ID: 11478870
    [TBL] [Abstract][Full Text] [Related]  

  • 10. Excluded volume in protein side-chain packing.
    Kussell E; Shimada J; Shakhnovich EI
    J Mol Biol; 2001 Aug; 311(1):183-93. PubMed ID: 11469867
    [TBL] [Abstract][Full Text] [Related]  

  • 11. Importance of chirality and reduced flexibility of protein side chains: a study with square and tetrahedral lattice models.
    Zhang J; Chen Y; Chen R; Liang J
    J Chem Phys; 2004 Jul; 121(1):592-603. PubMed ID: 15260581
    [TBL] [Abstract][Full Text] [Related]  

  • 12. Modeling side-chain conformation for homologous proteins using an energy-based rotamer search.
    Wilson C; Gregoret LM; Agard DA
    J Mol Biol; 1993 Feb; 229(4):996-1006. PubMed ID: 8445659
    [TBL] [Abstract][Full Text] [Related]  

  • 13. Rotamer strain energy in protein helices - quantification of a major force opposing protein folding.
    Penel S; Doig AJ
    J Mol Biol; 2001 Jan; 305(4):961-8. PubMed ID: 11162106
    [TBL] [Abstract][Full Text] [Related]  

  • 14. Structure-fluorescence correlations in a single tryptophan mutant of carp parvalbumin: solution structure, backbone and side-chain dynamics.
    Moncrieffe MC; Juranic N; Kemple MD; Potter JD; Macura S; Prendergast FG
    J Mol Biol; 2000 Mar; 297(1):147-63. PubMed ID: 10704313
    [TBL] [Abstract][Full Text] [Related]  

  • 15. Rapid refinement of protein interfaces incorporating solvation: application to the docking problem.
    Jackson RM; Gabb HA; Sternberg MJ
    J Mol Biol; 1998 Feb; 276(1):265-85. PubMed ID: 9514726
    [TBL] [Abstract][Full Text] [Related]  

  • 16. Do rotamer libraries reproduce the side-chain conformations of peptidic ligands from the PDB?
    Pupo A; Moreno E
    J Mol Graph Model; 2009 Jan; 27(5):611-9. PubMed ID: 19028123
    [TBL] [Abstract][Full Text] [Related]  

  • 17. A consistent set of statistical potentials for quantifying local side-chain and backbone interactions.
    Fang Q; Shortle D
    Proteins; 2005 Jul; 60(1):90-6. PubMed ID: 15852305
    [TBL] [Abstract][Full Text] [Related]  

  • 18. Prediction and evaluation of side-chain conformations for protein backbone structures.
    Shenkin PS; Farid H; Fetrow JS
    Proteins; 1996 Nov; 26(3):323-52. PubMed ID: 8953653
    [TBL] [Abstract][Full Text] [Related]  

  • 19. Beyond the rotamer library: genetic algorithm combined with the disturbing mutation process for upbuilding protein side-chains.
    Liu Z; Jiang L; Gao Y; Liang S; Chen H; Han Y; Lai L
    Proteins; 2003 Jan; 50(1):49-62. PubMed ID: 12471599
    [TBL] [Abstract][Full Text] [Related]  

  • 20. Bayesian statistical analysis of protein side-chain rotamer preferences.
    Dunbrack RL; Cohen FE
    Protein Sci; 1997 Aug; 6(8):1661-81. PubMed ID: 9260279
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 18.