1152 related articles for article (PubMed ID: 11697912)
1. Assignment of homology to genome sequences using a library of hidden Markov models that represent all proteins of known structure.
Gough J; Karplus K; Hughey R; Chothia C
J Mol Biol; 2001 Nov; 313(4):903-19. PubMed ID: 11697912
[TBL] [Abstract][Full Text] [Related]
2. The SUPERFAMILY database in 2004: additions and improvements.
Madera M; Vogel C; Kummerfeld SK; Chothia C; Gough J
Nucleic Acids Res; 2004 Jan; 32(Database issue):D235-9. PubMed ID: 14681402
[TBL] [Abstract][Full Text] [Related]
3. Accurate domain identification with structure-anchored hidden Markov models, saHMMs.
Tångrot JE; Kågström B; Sauer UH
Proteins; 2009 Aug; 76(2):343-52. PubMed ID: 19173309
[TBL] [Abstract][Full Text] [Related]
4. Fast model-based protein homology detection without alignment.
Hochreiter S; Heusel M; Obermayer K
Bioinformatics; 2007 Jul; 23(14):1728-36. PubMed ID: 17488755
[TBL] [Abstract][Full Text] [Related]
5. On single and multiple models of protein families for the detection of remote sequence relationships.
Casbon JA; Saqi MA
BMC Bioinformatics; 2006 Jan; 7():48. PubMed ID: 16448555
[TBL] [Abstract][Full Text] [Related]
6. 3D-GENOMICS: a database to compare structural and functional annotations of proteins between sequenced genomes.
Fleming K; Müller A; MacCallum RM; Sternberg MJ
Nucleic Acids Res; 2004 Jan; 32(Database issue):D245-50. PubMed ID: 14681404
[TBL] [Abstract][Full Text] [Related]
7. Detecting distant homologs using phylogenetic tree-based HMMs.
Qian B; Goldstein RA
Proteins; 2003 Aug; 52(3):446-53. PubMed ID: 12866055
[TBL] [Abstract][Full Text] [Related]
8. Cadherin superfamily proteins in Caenorhabditis elegans and Drosophila melanogaster.
Hill E; Broadbent ID; Chothia C; Pettitt J
J Mol Biol; 2001 Feb; 305(5):1011-24. PubMed ID: 11162110
[TBL] [Abstract][Full Text] [Related]
9. FISH--family identification of sequence homologues using structure anchored hidden Markov models.
Tångrot J; Wang L; Kågström B; Sauer UH
Nucleic Acids Res; 2006 Jul; 34(Web Server issue):W10-4. PubMed ID: 16844969
[TBL] [Abstract][Full Text] [Related]
10. HMMSTR: a hidden Markov model for local sequence-structure correlations in proteins.
Bystroff C; Thorsson V; Baker D
J Mol Biol; 2000 Aug; 301(1):173-90. PubMed ID: 10926500
[TBL] [Abstract][Full Text] [Related]
11. Hidden Markov models that use predicted local structure for fold recognition: alphabets of backbone geometry.
Karchin R; Cline M; Mandel-Gutfreund Y; Karplus K
Proteins; 2003 Jun; 51(4):504-14. PubMed ID: 12784210
[TBL] [Abstract][Full Text] [Related]
12. HMM-ModE--improved classification using profile hidden Markov models by optimising the discrimination threshold and modifying emission probabilities with negative training sequences.
Srivastava PK; Desai DK; Nandi S; Lynn AM
BMC Bioinformatics; 2007 Mar; 8():104. PubMed ID: 17389042
[TBL] [Abstract][Full Text] [Related]
13. Sequence comparison and protein structure prediction.
Dunbrack RL
Curr Opin Struct Biol; 2006 Jun; 16(3):374-84. PubMed ID: 16713709
[TBL] [Abstract][Full Text] [Related]
14. Sequence comparisons using multiple sequences detect three times as many remote homologues as pairwise methods.
Park J; Karplus K; Barrett C; Hughey R; Haussler D; Hubbard T; Chothia C
J Mol Biol; 1998 Dec; 284(4):1201-10. PubMed ID: 9837738
[TBL] [Abstract][Full Text] [Related]
15. Hidden Markov models that use predicted secondary structures for fold recognition.
Hargbo J; Elofsson A
Proteins; 1999 Jul; 36(1):68-76. PubMed ID: 10373007
[TBL] [Abstract][Full Text] [Related]
16. Assessing strategies for improved superfamily recognition.
Sillitoe I; Dibley M; Bray J; Addou S; Orengo C
Protein Sci; 2005 Jul; 14(7):1800-10. PubMed ID: 15937274
[TBL] [Abstract][Full Text] [Related]
17. Protein classification based on text document classification techniques.
Cheng BY; Carbonell JG; Klein-Seetharaman J
Proteins; 2005 Mar; 58(4):955-70. PubMed ID: 15645499
[TBL] [Abstract][Full Text] [Related]
18. [Analysis, identification and correction of some errors of model refseqs appeared in NCBI Human Gene Database by in silico cloning and experimental verification of novel human genes].
Zhang DL; Ji L; Li YD
Yi Chuan Xue Bao; 2004 May; 31(5):431-43. PubMed ID: 15478601
[TBL] [Abstract][Full Text] [Related]
19. DomIns: a web resource for domain insertions in known protein structures.
Selvam RA; Sasidharan R
Nucleic Acids Res; 2004 Jan; 32(Database issue):D193-5. PubMed ID: 14681392
[TBL] [Abstract][Full Text] [Related]
20. NdPASA: a novel pairwise protein sequence alignment algorithm that incorporates neighbor-dependent amino acid propensities.
Wang J; Feng JA
Proteins; 2005 Feb; 58(3):628-37. PubMed ID: 15616964
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]
