157 related articles for article (PubMed ID: 11724732)
21. Mutual information in protein multiple sequence alignments reveals two classes of coevolving positions.
Gloor GB; Martin LC; Wahl LM; Dunn SD
Biochemistry; 2005 May; 44(19):7156-65. PubMed ID: 15882054
[TBL] [Abstract][Full Text] [Related]
22. Protein meta-functional signatures from combining sequence, structure, evolution, and amino acid property information.
Wang K; Horst JA; Cheng G; Nickle DC; Samudrala R
PLoS Comput Biol; 2008 Sep; 4(9):e1000181. PubMed ID: 18818722
[TBL] [Abstract][Full Text] [Related]
23. Evolutionary classification of homeodomains.
Gindilis V; Goltsman E; Verlinsky Y
J Assist Reprod Genet; 1998 May; 15(5):349-57. PubMed ID: 9604773
[TBL] [Abstract][Full Text] [Related]
24. Rheostats and toggle switches for modulating protein function.
Meinhardt S; Manley MW; Parente DJ; Swint-Kruse L
PLoS One; 2013; 8(12):e83502. PubMed ID: 24386217
[TBL] [Abstract][Full Text] [Related]
25. Effect of co-evolving amino acid residues on topology of phylogenetic trees.
Sherbakov DY; Triboy TI
Biochemistry (Mosc); 2007 Dec; 72(12):1363-7. PubMed ID: 18205620
[TBL] [Abstract][Full Text] [Related]
26. Improved pairwise alignments of proteins in the Twilight Zone using local structure predictions.
Huang YM; Bystroff C
Bioinformatics; 2006 Feb; 22(4):413-22. PubMed ID: 16352653
[TBL] [Abstract][Full Text] [Related]
27. Discovering empirically conserved amino acid substitution groups in databases of protein families.
Wu TD; Brutlag DL
Proc Int Conf Intell Syst Mol Biol; 1996; 4():230-40. PubMed ID: 8877523
[TBL] [Abstract][Full Text] [Related]
28. The ConSurf-HSSP database: the mapping of evolutionary conservation among homologs onto PDB structures.
Glaser F; Rosenberg Y; Kessel A; Pupko T; Ben-Tal N
Proteins; 2005 Feb; 58(3):610-7. PubMed ID: 15614759
[TBL] [Abstract][Full Text] [Related]
29. Iterative sequence/secondary structure search for protein homologs: comparison with amino acid sequence alignments and application to fold recognition in genome databases.
Wallqvist A; Fukunishi Y; Murphy LR; Fadel A; Levy RM
Bioinformatics; 2000 Nov; 16(11):988-1002. PubMed ID: 11159310
[TBL] [Abstract][Full Text] [Related]
30. Evolutionary Conserved Positions Define Protein Conformational Diversity.
SaldaƱo TE; Monzon AM; Parisi G; Fernandez-Alberti S
PLoS Comput Biol; 2016 Mar; 12(3):e1004775. PubMed ID: 27008419
[TBL] [Abstract][Full Text] [Related]
31. PHYSEAN: PHYsical SEquence ANalysis for the identification of protein domains on the basis of physical and chemical properties of amino acids.
Ladunga I
Bioinformatics; 1999 Dec; 15(12):1028-38. PubMed ID: 10745993
[TBL] [Abstract][Full Text] [Related]
32. Distinguishing structural and functional restraints in evolution in order to identify interaction sites.
Chelliah V; Chen L; Blundell TL; Lovell SC
J Mol Biol; 2004 Oct; 342(5):1487-504. PubMed ID: 15364576
[TBL] [Abstract][Full Text] [Related]
33. Effects of side-chain characteristics on stability and oligomerization state of a de novo-designed model coiled-coil: 20 amino acid substitutions in position "d".
Tripet B; Wagschal K; Lavigne P; Mant CT; Hodges RS
J Mol Biol; 2000 Jul; 300(2):377-402. PubMed ID: 10873472
[TBL] [Abstract][Full Text] [Related]
34. BIS2Analyzer: a server for co-evolution analysis of conserved protein families.
Oteri F; Nadalin F; Champeimont R; Carbone A
Nucleic Acids Res; 2017 Jul; 45(W1):W307-W314. PubMed ID: 28472458
[TBL] [Abstract][Full Text] [Related]
35. Bioinformatics identification of coevolving residues.
Dickson RJ; Gloor GB
Methods Mol Biol; 2014; 1123():223-43. PubMed ID: 24510270
[TBL] [Abstract][Full Text] [Related]
36. Conformational and physicochemical DNA features specific for transcription factor binding sites.
Ponomarenko JV; Ponomarenko MP; Frolov AS; Vorobyev DG; Overton GC; Kolchanov NA
Bioinformatics; 1999; 15(7-8):654-68. PubMed ID: 10487873
[TBL] [Abstract][Full Text] [Related]
37. Analysis of conservation and substitutions of secondary structure elements within protein superfamilies.
Mizuguchi K; Blundell T
Bioinformatics; 2000 Dec; 16(12):1111-9. PubMed ID: 11159330
[TBL] [Abstract][Full Text] [Related]
38. Evolutionary trace analysis of the Kunitz/BPTI family of proteins: functional divergence may have been based on conformational adjustment.
Pritchard L; Dufton MJ
J Mol Biol; 1999 Jan; 285(4):1589-607. PubMed ID: 9917399
[TBL] [Abstract][Full Text] [Related]
39. Modeling effects of human single nucleotide polymorphisms on protein-protein interactions.
Teng S; Madej T; Panchenko A; Alexov E
Biophys J; 2009 Mar; 96(6):2178-88. PubMed ID: 19289044
[TBL] [Abstract][Full Text] [Related]
40. Size and structure of the sequence space of repeat proteins.
Marchi J; Galpern EA; Espada R; Ferreiro DU; Walczak AM; Mora T
PLoS Comput Biol; 2019 Aug; 15(8):e1007282. PubMed ID: 31415557
[TBL] [Abstract][Full Text] [Related]
[Previous] [Next] [New Search]