These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.


BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

168 related articles for article (PubMed ID: 11752185)

  • 1. Estimating amino acid substitution models: a comparison of Dayhoff's estimator, the resolvent approach and a maximum likelihood method.
    Müller T; Spang R; Vingron M
    Mol Biol Evol; 2002 Jan; 19(1):8-13. PubMed ID: 11752185
    [TBL] [Abstract][Full Text] [Related]  

  • 2. Modeling amino acid replacement.
    Müller T; Vingron M
    J Comput Biol; 2000; 7(6):761-76. PubMed ID: 11382360
    [TBL] [Abstract][Full Text] [Related]  

  • 3. Efficient methods for estimating amino acid replacement rates.
    Arvestad L
    J Mol Evol; 2006 Jun; 62(6):663-73. PubMed ID: 16752207
    [TBL] [Abstract][Full Text] [Related]  

  • 4. Scoredist: a simple and robust protein sequence distance estimator.
    Sonnhammer EL; Hollich V
    BMC Bioinformatics; 2005 Apr; 6():108. PubMed ID: 15857510
    [TBL] [Abstract][Full Text] [Related]  

  • 5. Pseudo-likelihood for non-reversible nucleotide substitution models with neighbour dependent rates.
    Christensen OF
    Stat Appl Genet Mol Biol; 2006; 5():Article18. PubMed ID: 17049029
    [TBL] [Abstract][Full Text] [Related]  

  • 6. Bayesian coestimation of phylogeny and sequence alignment.
    Lunter G; Miklós I; Drummond A; Jensen JL; Hein J
    BMC Bioinformatics; 2005 Apr; 6():83. PubMed ID: 15804354
    [TBL] [Abstract][Full Text] [Related]  

  • 7. Empirical models for substitution in ribosomal RNA.
    Smith AD; Lui TW; Tillier ER
    Mol Biol Evol; 2004 Mar; 21(3):419-27. PubMed ID: 14660689
    [TBL] [Abstract][Full Text] [Related]  

  • 8. An amino acid substitution-selection model adjusts residue fitness to improve phylogenetic estimation.
    Wang HC; Susko E; Roger AJ
    Mol Biol Evol; 2014 Apr; 31(4):779-92. PubMed ID: 24441033
    [TBL] [Abstract][Full Text] [Related]  

  • 9. CodonTest: modeling amino acid substitution preferences in coding sequences.
    Delport W; Scheffler K; Botha G; Gravenor MB; Muse SV; Kosakovsky Pond SL
    PLoS Comput Biol; 2010 Aug; 6(8):. PubMed ID: 20808876
    [TBL] [Abstract][Full Text] [Related]  

  • 10. Relating physicochemical properties of amino acids to variable nucleotide substitution patterns among sites.
    Yang Z
    Pac Symp Biocomput; 2000; ():81-92. PubMed ID: 10902158
    [TBL] [Abstract][Full Text] [Related]  

  • 11. Bayesian estimation of divergence times from large sequence alignments.
    Guindon S
    Mol Biol Evol; 2010 Aug; 27(8):1768-81. PubMed ID: 20194424
    [TBL] [Abstract][Full Text] [Related]  

  • 12. An expectation maximization algorithm for training hidden substitution models.
    Holmes I; Rubin GM
    J Mol Biol; 2002 Apr; 317(5):753-64. PubMed ID: 11955022
    [TBL] [Abstract][Full Text] [Related]  

  • 13. FastMG: a simple, fast, and accurate maximum likelihood procedure to estimate amino acid replacement rate matrices from large data sets.
    Dang CC; Le VS; Gascuel O; Hazes B; Le QS
    BMC Bioinformatics; 2014 Oct; 15(1):341. PubMed ID: 25344302
    [TBL] [Abstract][Full Text] [Related]  

  • 14. Application of protein structure alignments to iterated hidden Markov model protocols for structure prediction.
    Scheeff ED; Bourne PE
    BMC Bioinformatics; 2006 Sep; 7():410. PubMed ID: 16970830
    [TBL] [Abstract][Full Text] [Related]  

  • 15. Statistical alignment with a sequence evolution model allowing rate heterogeneity along the sequence.
    Arribas-Gil A; Metzler D; Plouhinec JL
    IEEE/ACM Trans Comput Biol Bioinform; 2009; 6(2):281-95. PubMed ID: 19407352
    [TBL] [Abstract][Full Text] [Related]  

  • 16. SATe-II: very fast and accurate simultaneous estimation of multiple sequence alignments and phylogenetic trees.
    Liu K; Warnow TJ; Holder MT; Nelesen SM; Yu J; Stamatakis AP; Linder CR
    Syst Biol; 2012 Jan; 61(1):90-106. PubMed ID: 22139466
    [TBL] [Abstract][Full Text] [Related]  

  • 17. Accurate reconstruction of insertion-deletion histories by statistical phylogenetics.
    Westesson O; Lunter G; Paten B; Holmes I
    PLoS One; 2012; 7(4):e34572. PubMed ID: 22536326
    [TBL] [Abstract][Full Text] [Related]  

  • 18. A novel use of equilibrium frequencies in models of sequence evolution.
    Goldman N; Whelan S
    Mol Biol Evol; 2002 Nov; 19(11):1821-31. PubMed ID: 12411592
    [TBL] [Abstract][Full Text] [Related]  

  • 19. A general empirical model of protein evolution derived from multiple protein families using a maximum-likelihood approach.
    Whelan S; Goldman N
    Mol Biol Evol; 2001 May; 18(5):691-9. PubMed ID: 11319253
    [TBL] [Abstract][Full Text] [Related]  

  • 20. Codon substitution models based on residue similarity and their applications.
    Liu X; Liu H; Guo W; Yu K
    Gene; 2012 Nov; 509(1):136-41. PubMed ID: 22902303
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 9.