These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.


BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

164 related articles for article (PubMed ID: 11752185)

  • 41. Equiprobable discrete models of site-specific substitution rates underestimate the extent of rate variability.
    Mannino F; Wisotsky S; Kosakovsky Pond SL; Muse SV
    PLoS One; 2020; 15(3):e0229493. PubMed ID: 32119689
    [TBL] [Abstract][Full Text] [Related]  

  • 42. Antibody-specific model of amino acid substitution for immunological inferences from alignments of antibody sequences.
    Mirsky A; Kazandjian L; Anisimova M
    Mol Biol Evol; 2015 Mar; 32(3):806-19. PubMed ID: 25534034
    [TBL] [Abstract][Full Text] [Related]  

  • 43. A generalized mechanistic codon model.
    Zaheri M; Dib L; Salamin N
    Mol Biol Evol; 2014 Sep; 31(9):2528-41. PubMed ID: 24958740
    [TBL] [Abstract][Full Text] [Related]  

  • 44. Family specific rates of protein evolution.
    Luz H; Vingron M
    Bioinformatics; 2006 May; 22(10):1166-71. PubMed ID: 16510497
    [TBL] [Abstract][Full Text] [Related]  

  • 45. Hidden Markov Models of the G-protein-coupled receptor family.
    Baldi P; Chauvin Y
    J Comput Biol; 1994; 1(4):311-36. PubMed ID: 8790474
    [TBL] [Abstract][Full Text] [Related]  

  • 46. A new criterion and method for amino acid classification.
    Kosiol C; Goldman N; Buttimore NH
    J Theor Biol; 2004 May; 228(1):97-106. PubMed ID: 15064085
    [TBL] [Abstract][Full Text] [Related]  

  • 47. A new parameter-rich structure-aware mechanistic model for amino acid substitution during evolution.
    Chi PB; Kim D; Lai JK; Bykova N; Weber CC; Kubelka J; Liberles DA
    Proteins; 2018 Feb; 86(2):218-228. PubMed ID: 29178386
    [TBL] [Abstract][Full Text] [Related]  

  • 48. Ancestral sequence alignment under optimal conditions.
    Hudek AK; Brown DG
    BMC Bioinformatics; 2005 Nov; 6():273. PubMed ID: 16293191
    [TBL] [Abstract][Full Text] [Related]  

  • 49. Simultaneous sequence alignment and tree construction using hidden Markov models.
    Edgar RC; Sjölander K
    Pac Symp Biocomput; 2003; ():180-91. PubMed ID: 12603027
    [TBL] [Abstract][Full Text] [Related]  

  • 50. The compositional adjustment of amino acid substitution matrices.
    Yu YK; Wootton JC; Altschul SF
    Proc Natl Acad Sci U S A; 2003 Dec; 100(26):15688-93. PubMed ID: 14663142
    [TBL] [Abstract][Full Text] [Related]  

  • 51. Regularities in mutational variability in selected protein families and the Markovian model of amino acid replacement.
    Leluk J
    Comput Chem; 2000 Sep; 24(6):659-72. PubMed ID: 10966124
    [TBL] [Abstract][Full Text] [Related]  

  • 52. Testing homology with Contact Accepted mutatiOn (CAO): a contact-based Markov model of protein evolution.
    Lin K; Kleinjung J; Taylor WR; Heringa J
    Comput Biol Chem; 2003 May; 27(2):93-102. PubMed ID: 12821306
    [TBL] [Abstract][Full Text] [Related]  

  • 53. Rates of molecular evolution in RNA viruses: a quantitative phylogenetic analysis.
    Jenkins GM; Rambaut A; Pybus OG; Holmes EC
    J Mol Evol; 2002 Feb; 54(2):156-65. PubMed ID: 11821909
    [TBL] [Abstract][Full Text] [Related]  

  • 54. A "Long Indel" model for evolutionary sequence alignment.
    Miklós I; Lunter GA; Holmes I
    Mol Biol Evol; 2004 Mar; 21(3):529-40. PubMed ID: 14694074
    [TBL] [Abstract][Full Text] [Related]  

  • 55. Rapid and accurate large-scale coestimation of sequence alignments and phylogenetic trees.
    Liu K; Raghavan S; Nelesen S; Linder CR; Warnow T
    Science; 2009 Jun; 324(5934):1561-4. PubMed ID: 19541996
    [TBL] [Abstract][Full Text] [Related]  

  • 56. Evolution of amino acid frequencies in proteins over deep time: inferred order of introduction of amino acids into the genetic code.
    Brooks DJ; Fresco JR; Lesk AM; Singh M
    Mol Biol Evol; 2002 Oct; 19(10):1645-55. PubMed ID: 12270892
    [TBL] [Abstract][Full Text] [Related]  

  • 57. Maximum likelihood analysis of adaptive evolution in HIV-1 gp120 env gene.
    Yang Z
    Pac Symp Biocomput; 2001; ():226-37. PubMed ID: 11262943
    [TBL] [Abstract][Full Text] [Related]  

  • 58. Unraveling the evolutionary radiation of the thoracican barnacles using molecular and morphological evidence: a comparison of several divergence time estimation approaches.
    Pérez-Losada M; Høeg JT; Crandall KA
    Syst Biol; 2004 Apr; 53(2):244-64. PubMed ID: 15205051
    [TBL] [Abstract][Full Text] [Related]  

  • 59. Bayesian restoration of a hidden Markov chain with applications to DNA sequencing.
    Churchill GA; Lazareva B
    J Comput Biol; 1999; 6(2):261-77. PubMed ID: 10421527
    [TBL] [Abstract][Full Text] [Related]  

  • 60. nQMaker: Estimating Time Nonreversible Amino Acid Substitution Models.
    Dang CC; Minh BQ; McShea H; Masel J; James JE; Vinh LS; Lanfear R
    Syst Biol; 2022 Aug; 71(5):1110-1123. PubMed ID: 35139203
    [TBL] [Abstract][Full Text] [Related]  

    [Previous]   [Next]    [New Search]
    of 9.