145 related articles for article (PubMed ID: 11800565)
1. Conservation helps to identify biologically relevant crystal contacts.
Valdar WS; Thornton JM
J Mol Biol; 2001 Oct; 313(2):399-416. PubMed ID: 11800565
[TBL] [Abstract][Full Text] [Related]
2. Protein-protein interfaces: analysis of amino acid conservation in homodimers.
Valdar WS; Thornton JM
Proteins; 2001 Jan; 42(1):108-24. PubMed ID: 11093265
[TBL] [Abstract][Full Text] [Related]
3. Prediction of subcellular localization of eukaryotic proteins using position-specific profiles and neural network with weighted inputs.
Zou L; Wang Z; Huang J
J Genet Genomics; 2007 Dec; 34(12):1080-7. PubMed ID: 18155620
[TBL] [Abstract][Full Text] [Related]
4. A combinatorial score to distinguish biological and nonbiological protein-protein interfaces.
Liu S; Li Q; Lai L
Proteins; 2006 Jul; 64(1):68-78. PubMed ID: 16596649
[TBL] [Abstract][Full Text] [Related]
5. Detection of 3D atomic similarities and their use in the discrimination of small molecule protein-binding sites.
Najmanovich R; Kurbatova N; Thornton J
Bioinformatics; 2008 Aug; 24(16):i105-11. PubMed ID: 18689810
[TBL] [Abstract][Full Text] [Related]
6. Structural clusters of evolutionary trace residues are statistically significant and common in proteins.
Madabushi S; Yao H; Marsh M; Kristensen DM; Philippi A; Sowa ME; Lichtarge O
J Mol Biol; 2002 Feb; 316(1):139-54. PubMed ID: 11829509
[TBL] [Abstract][Full Text] [Related]
7. Contact prediction using mutual information and neural nets.
Shackelford G; Karplus K
Proteins; 2007; 69 Suppl 8():159-64. PubMed ID: 17932918
[TBL] [Abstract][Full Text] [Related]
8. An improved prediction of catalytic residues in enzyme structures.
Tang YR; Sheng ZY; Chen YZ; Zhang Z
Protein Eng Des Sel; 2008 May; 21(5):295-302. PubMed ID: 18287176
[TBL] [Abstract][Full Text] [Related]
9. Sequence-based protein domain boundary prediction using BP neural network with various property profiles.
Ye L; Liu T; Wu Z; Zhou R
Proteins; 2008 Apr; 71(1):300-7. PubMed ID: 17932915
[TBL] [Abstract][Full Text] [Related]
10. CRK: an evolutionary approach for distinguishing biologically relevant interfaces from crystal contacts.
Schärer MA; Grütter MG; Capitani G
Proteins; 2010 Sep; 78(12):2707-13. PubMed ID: 20589644
[TBL] [Abstract][Full Text] [Related]
11. Prediction of helix-helix contacts and interacting helices in polytopic membrane proteins using neural networks.
Fuchs A; Kirschner A; Frishman D
Proteins; 2009 Mar; 74(4):857-71. PubMed ID: 18704938
[TBL] [Abstract][Full Text] [Related]
12. Achieving 80% ten-fold cross-validated accuracy for secondary structure prediction by large-scale training.
Dor O; Zhou Y
Proteins; 2007 Mar; 66(4):838-45. PubMed ID: 17177203
[TBL] [Abstract][Full Text] [Related]
13. Docking prediction using biological information, ZDOCK sampling technique, and clustering guided by the DFIRE statistical energy function.
Zhang C; Liu S; Zhou Y
Proteins; 2005 Aug; 60(2):314-8. PubMed ID: 15981255
[TBL] [Abstract][Full Text] [Related]
14. Statistical analysis and prediction of protein-protein interfaces.
Bordner AJ; Abagyan R
Proteins; 2005 Aug; 60(3):353-66. PubMed ID: 15906321
[TBL] [Abstract][Full Text] [Related]
15. Generalized modeling of enzyme-ligand interactions using proteochemometrics and local protein substructures.
Strömbergsson H; Kryshtafovych A; Prusis P; Fidelis K; Wikberg JE; Komorowski J; Hvidsten TR
Proteins; 2006 Nov; 65(3):568-79. PubMed ID: 16948162
[TBL] [Abstract][Full Text] [Related]
16. Interresidue contacts in proteins and protein-protein interfaces and their use in characterizing the homodimeric interface.
Saha RP; Bahadur RP; Chakrabarti P
J Proteome Res; 2005; 4(5):1600-9. PubMed ID: 16212412
[TBL] [Abstract][Full Text] [Related]
17. Prediction of functional specificity determinants from protein sequences using log-likelihood ratios.
Pei J; Cai W; Kinch LN; Grishin NV
Bioinformatics; 2006 Jan; 22(2):164-71. PubMed ID: 16278237
[TBL] [Abstract][Full Text] [Related]
18. Computational analysis of human protein interaction networks.
Ramírez F; Schlicker A; Assenov Y; Lengauer T; Albrecht M
Proteomics; 2007 Aug; 7(15):2541-52. PubMed ID: 17647236
[TBL] [Abstract][Full Text] [Related]
19. Prediction of disordered regions in proteins from position specific score matrices.
Jones DT; Ward JJ
Proteins; 2003; 53 Suppl 6():573-8. PubMed ID: 14579348
[TBL] [Abstract][Full Text] [Related]
20. Variation in structural location and amino acid conservation of functional sites in protein domain families.
Pils B; Copley RR; Schultz J
BMC Bioinformatics; 2005 Aug; 6():210. PubMed ID: 16122386
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]