These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.
45. Condition specific transcription factor binding site characterization in Saccharomyces cerevisiae. Harrison R; DeLisi C Bioinformatics; 2002 Oct; 18(10):1289-96. PubMed ID: 12376372 [TBL] [Abstract][Full Text] [Related]
46. Gapped alignment of protein sequence motifs through Monte Carlo optimization of a hidden Markov model. Neuwald AF; Liu JS BMC Bioinformatics; 2004 Oct; 5():157. PubMed ID: 15504234 [TBL] [Abstract][Full Text] [Related]
47. SUPFAM--a database of potential protein superfamily relationships derived by comparing sequence-based and structure-based families: implications for structural genomics and function annotation in genomes. Pandit SB; Gosar D; Abhiman S; Sujatha S; Dixit SS; Mhatre NS; Sowdhamini R; Srinivasan N Nucleic Acids Res; 2002 Jan; 30(1):289-93. PubMed ID: 11752317 [TBL] [Abstract][Full Text] [Related]
48. FCP: functional coverage of the proteome by structures. García-Serna R; Opatowski L; Mestres J Bioinformatics; 2006 Jul; 22(14):1792-3. PubMed ID: 16705012 [TBL] [Abstract][Full Text] [Related]
50. The InterPro database and tools for protein domain analysis. Mulder NJ; Apweiler R Curr Protoc Bioinformatics; 2008 Mar; Chapter 2():Unit 2.7. PubMed ID: 18428686 [TBL] [Abstract][Full Text] [Related]
51. Transcription factor binding site identification using the self-organizing map. Mahony S; Hendrix D; Golden A; Smith TJ; Rokhsar DS Bioinformatics; 2005 May; 21(9):1807-14. PubMed ID: 15647296 [TBL] [Abstract][Full Text] [Related]
52. Rapid motif-based prediction of circular permutations in multi-domain proteins. Weiner J; Thomas G; Bornberg-Bauer E Bioinformatics; 2005 Apr; 21(7):932-7. PubMed ID: 15788783 [TBL] [Abstract][Full Text] [Related]
53. Staden: searching for motifs in protein sequences. Staden R Methods Mol Biol; 1994; 25():131-9. PubMed ID: 8004160 [No Abstract] [Full Text] [Related]
54. Proteomic tools for the analysis of cytoskeleton proteins. Wywial E; Dongre VN; Singh SM Methods Mol Biol; 2009; 586():375-88. PubMed ID: 19768443 [TBL] [Abstract][Full Text] [Related]
55. Constructing and refining multiple sequence alignments with PileUp, SeqLab, and the GCG suite. Thompson SM Curr Protoc Bioinformatics; 2003 Feb; Chapter 3():Unit 3.6. PubMed ID: 18428698 [TBL] [Abstract][Full Text] [Related]
56. Protein structure mining using a structural alphabet. Tyagi M; de Brevern AG; Srinivasan N; Offmann B Proteins; 2008 May; 71(2):920-37. PubMed ID: 18004784 [TBL] [Abstract][Full Text] [Related]
57. Web-based tools for studying RNA structure and function. George AD; Tenenbaum SA Methods Mol Biol; 2011; 703():67-86. PubMed ID: 21125484 [TBL] [Abstract][Full Text] [Related]
58. MUSA: a parameter free algorithm for the identification of biologically significant motifs. Mendes ND; Casimiro AC; Santos PM; Sá-Correia I; Oliveira AL; Freitas AT Bioinformatics; 2006 Dec; 22(24):2996-3002. PubMed ID: 17068086 [TBL] [Abstract][Full Text] [Related]
59. CompariMotif: quick and easy comparisons of sequence motifs. Edwards RJ; Davey NE; Shields DC Bioinformatics; 2008 May; 24(10):1307-9. PubMed ID: 18375965 [TBL] [Abstract][Full Text] [Related]
60. AliWABA: alignment on the web through an A-Bruijn approach. Jones NC; Zhi D; Raphael BJ Nucleic Acids Res; 2006 Jul; 34(Web Server issue):W613-6. PubMed ID: 16845083 [TBL] [Abstract][Full Text] [Related] [Previous] [Next] [New Search]