BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

129 related articles for article (PubMed ID: 11807754)

  • 1. A pH-dependent variation in alpha-helix structure of the S-peptide of ribonuclease A studied by Monte Carlo simulated annealing.
    Nakazawa T; Ban S; Okuda Y; Masuya M; Mitsutake A; Okamoto Y
    Biopolymers; 2002 Apr; 63(4):273-9. PubMed ID: 11807754
    [TBL] [Abstract][Full Text] [Related]  

  • 2. Dependence on the dielectric model and pH in a synthetic helical peptide studied by Monte Carlo simulated annealing.
    Okamoto Y
    Biopolymers; 1994 Apr; 34(4):529-39. PubMed ID: 8186363
    [TBL] [Abstract][Full Text] [Related]  

  • 3. Conformational analysis of the 20-residue membrane-bound portion of melittin by conformational space annealing.
    Lee J; Scheraga HA; Rackovsky S
    Biopolymers; 1998 Aug; 46(2):103-16. PubMed ID: 9664844
    [TBL] [Abstract][Full Text] [Related]  

  • 4. Two conformational states of Turkey ovomucoid third domain at low pH: three-dimensional structures, internal dynamics, and interconversion kinetics and thermodynamics.
    Song J; Laskowski M; Qasim MA; Markley JL
    Biochemistry; 2003 Jun; 42(21):6380-91. PubMed ID: 12767219
    [TBL] [Abstract][Full Text] [Related]  

  • 5. Molecular dynamics simulations of peptides and proteins with a continuum electrostatic model based on screened Coulomb potentials.
    Hassan SA; Mehler EL; Zhang D; Weinstein H
    Proteins; 2003 Apr; 51(1):109-25. PubMed ID: 12596268
    [TBL] [Abstract][Full Text] [Related]  

  • 6. Helix-forming tendencies of nonpolar amino acids predicted by Monte Carlo simulated annealing.
    Okamoto Y
    Proteins; 1994 May; 19(1):14-23. PubMed ID: 8066082
    [TBL] [Abstract][Full Text] [Related]  

  • 7. Alpha-helix folding by Monte Carlo simulated annealing in isolated C-peptide of ribonuclease A.
    Okamoto Y; Fukugita M; Nakazawa T; Kawai H
    Protein Eng; 1991 Aug; 4(6):639-47. PubMed ID: 1946321
    [TBL] [Abstract][Full Text] [Related]  

  • 8. Side-chain entropy effects on protein secondary structure formation.
    Chellgren BW; Creamer TP
    Proteins; 2006 Feb; 62(2):411-20. PubMed ID: 16315271
    [TBL] [Abstract][Full Text] [Related]  

  • 9. New developments of the electrostatically driven Monte Carlo method: test on the membrane-bound portion of melittin.
    Ripoll DR; Liwo A; Scheraga HA
    Biopolymers; 1998 Aug; 46(2):117-26. PubMed ID: 9664845
    [TBL] [Abstract][Full Text] [Related]  

  • 10. Free energy surfaces of beta-hairpin and alpha-helical peptides generated by replica exchange molecular dynamics with the AGBNP implicit solvent model.
    Felts AK; Harano Y; Gallicchio E; Levy RM
    Proteins; 2004 Aug; 56(2):310-21. PubMed ID: 15211514
    [TBL] [Abstract][Full Text] [Related]  

  • 11. On the pH-conformational dependence of the unblocked SYPYD peptide.
    Ripoll DR; Vila JA; Villegas ME; Scheraga HA
    J Mol Biol; 1999 Sep; 292(2):431-40. PubMed ID: 10493886
    [TBL] [Abstract][Full Text] [Related]  

  • 12. Thermal unfolding of helices of a C-peptide analogue of ribonuclease A in sodium dodecyl sulfate solution.
    Wu CS; Yang JT
    Biopolymers; 1990; 30(3-4):381-8. PubMed ID: 2279070
    [TBL] [Abstract][Full Text] [Related]  

  • 13. The loop problem in proteins: a Monte Carlo simulated annealing approach.
    Carlacci L; Englander SW
    Biopolymers; 1993 Aug; 33(8):1271-86. PubMed ID: 7689864
    [TBL] [Abstract][Full Text] [Related]  

  • 14. Side-chain interactions in the C-peptide helix: Phe 8 ... His 12+.
    Shoemaker KR; Fairman R; Schultz DA; Robertson AD; York EJ; Stewart JM; Baldwin RL
    Biopolymers; 1990 Jan; 29(1):1-11. PubMed ID: 2328280
    [TBL] [Abstract][Full Text] [Related]  

  • 15. Molecular dynamics simulation of a leucine zipper motif predicted for the integrase of human immunodeficiency virus type 1.
    Wang CY; Yang CF; Lai MC; Lee YH; Lee TL; Lin TH
    Biopolymers; 1994 Aug; 34(8):1027-36. PubMed ID: 8075385
    [TBL] [Abstract][Full Text] [Related]  

  • 16. Alpha-helix structure of parathyroid hormone fragment (1-34) predicted by Monte Carlo simulated annealing.
    Okamoto Y; Kikuchi T; Nakazawa T; Kawai H
    Int J Pept Protein Res; 1993 Sep; 42(3):300-3. PubMed ID: 8225786
    [TBL] [Abstract][Full Text] [Related]  

  • 17. Conformationally driven protease-catalyzed splicing of peptide segments: V8 protease-mediated synthesis of fragments derived from thermolysin and ribonuclease A.
    Kumaran S; Datta D; Roy RP
    Protein Sci; 1997 Oct; 6(10):2233-41. PubMed ID: 9336846
    [TBL] [Abstract][Full Text] [Related]  

  • 18. Insight into ribonuclease A domain swapping by molecular dynamics unfolding simulations.
    Esposito L; Daggett V
    Biochemistry; 2005 Mar; 44(9):3358-68. PubMed ID: 15736946
    [TBL] [Abstract][Full Text] [Related]  

  • 19. Infrared and vibrational CD spectra of partially solvated alpha-helices: DFT-based simulations with explicit solvent.
    Turner DR; Kubelka J
    J Phys Chem B; 2007 Feb; 111(7):1834-45. PubMed ID: 17256894
    [TBL] [Abstract][Full Text] [Related]  

  • 20. The effect of interactions involving ionizable residues flanking membrane-inserted hydrophobic helices upon helix-helix interaction.
    Lew S; Caputo GA; London E
    Biochemistry; 2003 Sep; 42(36):10833-42. PubMed ID: 12962508
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 7.